Tc03v2_t007510.4

Overview
NameTc03v2_t007510.4
Unique NameTc03v2_t007510.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1125
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productagamous-like MADS-box protein AGL65, transcript variant X3
NoteAgamous-like MADS-box protein AGL65
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604720
GenbankXM_018117722.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g007510Tc03v2_g007510Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p007510.4Tc03v2_p007510.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto154768auto154768Theobroma cacaoexon
exon-auto154769auto154769Theobroma cacaoexon
exon-auto154770auto154770Theobroma cacaoexon
exon-auto154771auto154771Theobroma cacaoexon
exon-auto154772auto154772Theobroma cacaoexon
exon-auto154773auto154773Theobroma cacaoexon
exon-auto154774auto154774Theobroma cacaoexon
exon-auto154775auto154775Theobroma cacaoexon
exon-auto154776auto154776Theobroma cacaoexon
exon-auto154777auto154777Theobroma cacaoexon
exon-auto154778auto154778Theobroma cacaoexon
exon-auto154779auto154779Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto154780auto154780Theobroma cacaoCDS
CDS-auto154781auto154781Theobroma cacaoCDS
CDS-auto154782auto154782Theobroma cacaoCDS
CDS-auto154783auto154783Theobroma cacaoCDS
CDS-auto154784auto154784Theobroma cacaoCDS
CDS-auto154785auto154785Theobroma cacaoCDS
CDS-auto154786auto154786Theobroma cacaoCDS
CDS-auto154787auto154787Theobroma cacaoCDS
CDS-auto154788auto154788Theobroma cacaoCDS
CDS-auto154789auto154789Theobroma cacaoCDS
CDS-auto154790auto154790Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t007510.4 ID=Tc03v2_t007510.4|Name=Tc03v2_t007510.4|organism=Theobroma cacao|type=mRNA|length=1125bp
ATGGGAAGGGTTAAACTAAAAATAAAAAGGTTAGAGAGCACTAGCAACAG
GCAAGTTACATATTCGAAACGCAGAACTGGAATTTTGAAGAAAGCTAAGG
AATTATCAATATTATGTGACATTGATATTATACTTCTCATGTTTTCTCCA
ACCGGAAGGCCTACGTTATTCCATGGAGAGCACAGCAATATTGAAGAGGT
TATTGCCAAGTTTGCACAATTAACACCACAAGAAAGGGCAAAAAGGAAGC
TGGAGAGCCTCGAAGCATTGAAGAAAACCTTCAAGAAATTGGATCACGAT
GTAAACATACAGGACTTTATAGGTGCAACCAGTCAATCTGTTGAGGAAAT
GAATAATGAGGTATCAATGTTGCAAGCTCAACTTACTGAAGTACATAAGA
GACTGAGCTACTGGAGTAATCCGGATAAAATTGACAATATAGAACATCTT
AGGCAGATGGAAGATATACTACGAGAATCCATTGAGCGTATCCAGATGCA
CAAGGAAAATTTTGGAAAGCACCATCTTATGCCACTAGAATGCACAAGCC
AGTTTCAGAATGGGATACCTTTGCCTATGATGATTGGTGGGGTGCAAGAA
GCACAGCCTGTTACGTGGCTTCCAAACAATGACAATCAACACATGTTATT
GCATAATGAACCAAGCTTTCTATCTCATCGAGATGCAGAATGTTCTGCAG
ATGGCTCCTTTGCAGGCTATTCTGGTTTCTTTGGGTCTGGTAAACAAATA
GAGATCGGCAGTTCAGGGCAAGTTGATAATGTGGTACAGGAAAGTAGTGC
CCTGAATGAATTAGGGAGTAATGCTTGCTTAAGTTTACAACTTGGTGAGC
AATATTTGTACCCGCCATATAGTGCTTCAAACTTGCAAGATGATGAGAAG
TTGAAGCCAGAGATGGAGGTGAACTTACCAGGAAATCCTGCTGTTTACCA
AGTTGTAAGCAACTTTGAAATCCCTAGACCTATGTATAACGGTGGGCCTC
AAGCTCGGATATCTTCTTCTGGCCCTTGTGGCATTATGATGTTTGATGGG
AATTCTTACCATCAGCAAACTAAATCGACTTTCATGAATCAGACACCTCC
ATCTGGAGAATTGCATAATTTGTAG
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protein sequence of Tc03v2_p007510.4

>Tc03v2_p007510.4 ID=Tc03v2_p007510.4|Name=Tc03v2_p007510.4|organism=Theobroma cacao|type=polypeptide|length=375bp
MGRVKLKIKRLESTSNRQVTYSKRRTGILKKAKELSILCDIDIILLMFSP
TGRPTLFHGEHSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHD
VNIQDFIGATSQSVEEMNNEVSMLQAQLTEVHKRLSYWSNPDKIDNIEHL
RQMEDILRESIERIQMHKENFGKHHLMPLECTSQFQNGIPLPMMIGGVQE
AQPVTWLPNNDNQHMLLHNEPSFLSHRDAECSADGSFAGYSGFFGSGKQI
EIGSSGQVDNVVQESSALNELGSNACLSLQLGEQYLYPPYSASNLQDDEK
LKPEMEVNLPGNPAVYQVVSNFEIPRPMYNGGPQARISSSGPCGIMMFDG
NSYHQQTKSTFMNQTPPSGELHNL*
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