Tc03v2_t007510.3

Overview
NameTc03v2_t007510.3
Unique NameTc03v2_t007510.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1125
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productagamous-like MADS-box protein AGL65, transcript variant X1
NoteAgamous-like MADS-box protein AGL65
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604720
GenbankXM_007037329.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g007510Tc03v2_g007510Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p007510.3Tc03v2_p007510.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto154743auto154743Theobroma cacaoexon
exon-auto154744auto154744Theobroma cacaoexon
exon-auto154745auto154745Theobroma cacaoexon
exon-auto154746auto154746Theobroma cacaoexon
exon-auto154747auto154747Theobroma cacaoexon
exon-auto154748auto154748Theobroma cacaoexon
exon-auto154749auto154749Theobroma cacaoexon
exon-auto154750auto154750Theobroma cacaoexon
exon-auto154751auto154751Theobroma cacaoexon
exon-auto154752auto154752Theobroma cacaoexon
exon-auto154753auto154753Theobroma cacaoexon
exon-auto154754auto154754Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto154755auto154755Theobroma cacaoCDS
CDS-auto154756auto154756Theobroma cacaoCDS
CDS-auto154757auto154757Theobroma cacaoCDS
CDS-auto154758auto154758Theobroma cacaoCDS
CDS-auto154759auto154759Theobroma cacaoCDS
CDS-auto154760auto154760Theobroma cacaoCDS
CDS-auto154761auto154761Theobroma cacaoCDS
CDS-auto154762auto154762Theobroma cacaoCDS
CDS-auto154763auto154763Theobroma cacaoCDS
CDS-auto154764auto154764Theobroma cacaoCDS
CDS-auto154765auto154765Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t007510.3 ID=Tc03v2_t007510.3|Name=Tc03v2_t007510.3|organism=Theobroma cacao|type=mRNA|length=1125bp
ATGGGAAGGGTTAAACTAAAAATAAAAAGGTTAGAGAGCACTAGCAACAG
GCAAGTTACATATTCGAAACGCAGAACTGGAATTTTGAAGAAAGCTAAGG
AATTATCAATATTATGTGACATTGATATTATACTTCTCATGTTTTCTCCA
ACCGGAAGGCCTACGTTATTCCATGGAGAGCACAGCAATATTGAAGAGGT
TATTGCCAAGTTTGCACAATTAACACCACAAGAAAGGGCAAAAAGGAAGC
TGGAGAGCCTCGAAGCATTGAAGAAAACCTTCAAGAAATTGGATCACGAT
GTAAACATACAGGACTTTATAGGTGCAACCAGTCAATCTGTTGAGGAAAT
GAATAATGAGGTATCAATGTTGCAAGCTCAACTTACTGAAGTACATAAGA
GACTGAGCTACTGGAGTAATCCGGATAAAATTGACAATATAGAACATCTT
AGGCAGATGGAAGATATACTACGAGAATCCATTGAGCGTATCCAGATGCA
CAAGGAAAATTTTGGAAAGCACCATCTTATGCCACTAGAATGCACAAGCC
AGTTTCAGAATGGGATACCTTTGCCTATGATGATTGGTGGGGTGCAAGAA
GCACAGCCTGTTACGTGGCTTCCAAACAATGACAATCAACACATGTTATT
GCATAATGAACCAAGCTTTCTATCTCATCGAGATGCAGAATGTTCTGCAG
ATGGCTCCTTTGCAGGCTATTCTGGTTTCTTTGGGTCTGGTAAACAAATA
GAGATCGGCAGTTCAGGGCAAGTTGATAATGTGGTACAGGAAAGTAGTGC
CCTGAATGAATTAGGGAGTAATGCTTGCTTAAGTTTACAACTTGGTGAGC
AATATTTGTACCCGCCATATAGTGCTTCAAACTTGCAAGATGATGAGAAG
TTGAAGCCAGAGATGGAGGTGAACTTACCAGGAAATCCTGCTGTTTACCA
AGTTGTAAGCAACTTTGAAATCCCTAGACCTATGTATAACGGTGGGCCTC
AAGCTCGGATATCTTCTTCTGGCCCTTGTGGCATTATGATGTTTGATGGG
AATTCTTACCATCAGCAAACTAAATCGACTTTCATGAATCAGACACCTCC
ATCTGGAGAATTGCATAATTTGTAG
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protein sequence of Tc03v2_p007510.3

>Tc03v2_p007510.3 ID=Tc03v2_p007510.3|Name=Tc03v2_p007510.3|organism=Theobroma cacao|type=polypeptide|length=375bp
MGRVKLKIKRLESTSNRQVTYSKRRTGILKKAKELSILCDIDIILLMFSP
TGRPTLFHGEHSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHD
VNIQDFIGATSQSVEEMNNEVSMLQAQLTEVHKRLSYWSNPDKIDNIEHL
RQMEDILRESIERIQMHKENFGKHHLMPLECTSQFQNGIPLPMMIGGVQE
AQPVTWLPNNDNQHMLLHNEPSFLSHRDAECSADGSFAGYSGFFGSGKQI
EIGSSGQVDNVVQESSALNELGSNACLSLQLGEQYLYPPYSASNLQDDEK
LKPEMEVNLPGNPAVYQVVSNFEIPRPMYNGGPQARISSSGPCGIMMFDG
NSYHQQTKSTFMNQTPPSGELHNL*
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