Tc03v2_t004680.1

Overview
NameTc03v2_t004680.1
Unique NameTc03v2_t004680.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1281
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productdihydropyrimidine dehydrogenase (NADP( )), chloroplastic
NoteDihydropyrimidine dehydrogenase (NADP( )), chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604415
GenbankXM_018118086.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g004680Tc03v2_g004680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p004680.1Tc03v2_p004680.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto149841auto149841Theobroma cacaoexon
exon-auto149842auto149842Theobroma cacaoexon
exon-auto149843auto149843Theobroma cacaoexon
exon-auto149844auto149844Theobroma cacaoexon
exon-auto149845auto149845Theobroma cacaoexon
exon-auto149846auto149846Theobroma cacaoexon
exon-auto149847auto149847Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto149848auto149848Theobroma cacaoCDS
CDS-auto149849auto149849Theobroma cacaoCDS
CDS-auto149850auto149850Theobroma cacaoCDS
CDS-auto149851auto149851Theobroma cacaoCDS
CDS-auto149852auto149852Theobroma cacaoCDS
CDS-auto149853auto149853Theobroma cacaoCDS
CDS-auto149854auto149854Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t004680.1 ID=Tc03v2_t004680.1|Name=Tc03v2_t004680.1|organism=Theobroma cacao|type=mRNA|length=1281bp
ATGGCATCTCTGAATTTCACTCAACTTGGTCACAAGAGCAGCAACTCCTT
TGCTGAATTTGCTCTGACTCGCCATGCTCCTCCCAGTTTCACTCGTCCCA
CTCGAGTTGGTTTCAAGGTCTTTGCTTCGGATTCTCAAGCAGAGCCTGAT
TTGAGCGTGTGTGTGAATGGGCTCCAAATGCCCAATCCATTTGTGATCGG
ATCGGGTCCACCGGGAACCAATTACACCGTCATGAAGAGAGCCTTCGATG
AAGGCTGGGGTGCTGTGATAGCCAAAACTGTGTCACTAGATGCTGCCAAG
GTTATCAATGTAACTCCTAGGTATGCCCGGCTACGAGCAGGAGCAAATGG
CTCAGCCAAAGGACAGATAATTGGGTGGGAGAACATCGAACTCATCAGTG
ACAGGCCTCTTGAAACTATGTTAAAAGAATTTAAGCAACTGAAAGAAGAA
TATCCAGACAGGATTCTCATTGCATCTATTATGGAGGAATATGACAAAGC
TGCCTGGGAAGAACTTATTGATCGAGTTGAGCAAACTGGGATTGATGCCA
TTGAAATTAATTTCTCATGCCCTCATGGCATGCCTGAGCGTAAAATGGGT
GCTGCAGTGGGGCAAGATTGTGCTCTGTTGGAGGAAGTTTGTGGATGGAT
AAATGCAAAAGCAACTGTTCCTGTGTGGGCAAAGATGACTCCTAACATCA
CTGACATCACACAGCCAGCCAGGGTGGCTTTAAGTTCAGGATGCAAGGGG
GTATCTGCTATTAATACAATCATGAGTGTGATGGGAATCAATCTTGATAC
TTTACGTCCTGAGCCTTGTGTTGAGGGCTACTCAACTCCTGGGGGCTATT
CTTGCAAAGCAGTCCATCCTATTGCACTTGCAAAAGTGATGAGCATTGCA
AAAATGATGAAATTGGAATTTAATGACAAGGAGTACTCACTTTCTGGCAT
TGGGGGTGTTGAGAAAGGGGATGATGCTGCTGAATTTATTCTTCTTGGAG
CAGATACTGTGCAGGTCTGTACGGGTGTTATGATGCATGGCTATGGCCTT
GTGAAGCAACTCTGTGCAGAGCTCAAGGATTTCATGAAGAAGCATAATTT
CTCATCAATAAATGATTTCAGAGGGGCTTCCCTTCAATATTTTACAACTC
ATACAGATTTAGTGCGAAGGCAGAAAGAAGCAATTCAAAAGAGGAAAGCT
GTTAAGAAAGGTTTGCAGTCTGACAAAGACTGGACAGGAGATGGCTTTGT
GAAAGAGACTGAGAGCATGGTTTCTAACTAA
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protein sequence of Tc03v2_p004680.1

>Tc03v2_p004680.1 ID=Tc03v2_p004680.1|Name=Tc03v2_p004680.1|organism=Theobroma cacao|type=polypeptide|length=427bp
MASLNFTQLGHKSSNSFAEFALTRHAPPSFTRPTRVGFKVFASDSQAEPD
LSVCVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAK
VINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKEE
YPDRILIASIMEEYDKAAWEELIDRVEQTGIDAIEINFSCPHGMPERKMG
AAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDITQPARVALSSGCKG
VSAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSCKAVHPIALAKVMSIA
KMMKLEFNDKEYSLSGIGGVEKGDDAAEFILLGADTVQVCTGVMMHGYGL
VKQLCAELKDFMKKHNFSSINDFRGASLQYFTTHTDLVRRQKEAIQKRKA
VKKGLQSDKDWTGDGFVKETESMVSN*
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