Tc03v2_t004520.2

Overview
NameTc03v2_t004520.2
Unique NameTc03v2_t004520.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1161
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Productprotein TIFY 6B, transcript variant X3
NotePutative Protein TIFY 6B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604385
GenbankXM_018118572.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g004520Tc03v2_g004520Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p004520.2Tc03v2_p004520.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto149438auto149438Theobroma cacaoexon
exon-auto149439auto149439Theobroma cacaoexon
exon-auto149440auto149440Theobroma cacaoexon
exon-auto149441auto149441Theobroma cacaoexon
exon-auto149442auto149442Theobroma cacaoexon
exon-auto149443auto149443Theobroma cacaoexon
exon-auto149444auto149444Theobroma cacaoexon
exon-auto149445auto149445Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto149446auto149446Theobroma cacaoCDS
CDS-auto149447auto149447Theobroma cacaoCDS
CDS-auto149448auto149448Theobroma cacaoCDS
CDS-auto149449auto149449Theobroma cacaoCDS
CDS-auto149450auto149450Theobroma cacaoCDS
CDS-auto149451auto149451Theobroma cacaoCDS
CDS-auto149452auto149452Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t004520.2 ID=Tc03v2_t004520.2|Name=Tc03v2_t004520.2|organism=Theobroma cacao|type=mRNA|length=1161bp
ATGGAGAGAGATTTTATGGGTTTGGGTTCAAAGCATGCTCCAGTTACTGT
CAAAGAGGAGGCCTGTGAAGGGCCTAAGGATTCAGTATTCTTAAGGGGTT
CAGGGATGCAGTTGTCTTTCTCAAACAAGGTATCTGCCATTCCTCAGTTC
CTGTCTTTCAAGGCTGCTCAAGAAGATAGGCTGAGGAAGACTGCTCATGA
TCCTCTAGTGTCATCTGGATTTATGGCTAAACCAACTGCTGATTCTAACC
CGAGACCATATTCTGGCTTGACCCAGAAACAACGGGGAAACCACTACACA
GTGACAACATTTGGTCTGCAACAGTTTGATGGACACCAACCCCACTGTTC
TCAGGAAGTGAGGTTATTTCCTGTCTCCAGCCAGCCGAATCAAACAATTG
CAGTTTCTATGAGCACTCCTCTTCTCCAGTCCCATCTTGTTTCCACTGGA
CAGAATACAATTGGTAATACAGTAACCCCACAACCTTTTGCAGGAGTCCC
AATCATGGCTCCCCCTGTATCTGTTGTTCCTCCATCAAGTTCCATTATTG
GTACAACTGAGCTTAGGAATGCTGCCAAATCTTCTCAGGCACCATCTCAG
TTGACTATCTTTTATGCTGGTTCTGTGTGTGTGTATGATGATGTGTCTCC
TGAGAAGGCCCAGGCTATTATGTTATTGGCTGGAAATGGGTCTTCTGCAG
CTCAGAGTAAATCGACTCCCGTGACTCAAGCACAGGCACCTATGCCACGA
CCTTGTGCTGCTGATGGTTTTGTTGGAAACAATAGCTCTACCATGTCACC
ATGCTCAGGCTTTCCAGGTCCTATTTCTGTAACCTCCCATGTCAGTTTAC
AGCCAGGTGAAGGATCTAGTGGCACCAATGATCTAACAGCTGCCACACGA
GTTGTAGCTATAACATCTTCTAATAATCAACCAGAGCGTCCCAGAGTGGT
TAATTCAGTAGGATCTGCTGCAACAAGTCTAATTCCAGCAGTAGCTGTGC
CTCAGGCTCGTAAAGCATCCTTGGCTCGATTTTTAGAGAAGCGTAAAGAA
AGGGTAACAAGCACCTCTCCATACAATATCAGCAAGAAATCGCCTGGATC
TGATGATATAAGTTTCTCCGTGACTTCTGCTGGATCCAGTCCTCGACCAG
CCGTCAACTAG
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protein sequence of Tc03v2_p004520.2

>Tc03v2_p004520.2 ID=Tc03v2_p004520.2|Name=Tc03v2_p004520.2|organism=Theobroma cacao|type=polypeptide|length=387bp
MERDFMGLGSKHAPVTVKEEACEGPKDSVFLRGSGMQLSFSNKVSAIPQF
LSFKAAQEDRLRKTAHDPLVSSGFMAKPTADSNPRPYSGLTQKQRGNHYT
VTTFGLQQFDGHQPHCSQEVRLFPVSSQPNQTIAVSMSTPLLQSHLVSTG
QNTIGNTVTPQPFAGVPIMAPPVSVVPPSSSIIGTTELRNAAKSSQAPSQ
LTIFYAGSVCVYDDVSPEKAQAIMLLAGNGSSAAQSKSTPVTQAQAPMPR
PCAADGFVGNNSSTMSPCSGFPGPISVTSHVSLQPGEGSSGTNDLTAATR
VVAITSSNNQPERPRVVNSVGSAATSLIPAVAVPQARKASLARFLEKRKE
RVTSTSPYNISKKSPGSDDISFSVTSAGSSPRPAVN*
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