Tc03v2_t004520.1

Overview
NameTc03v2_t004520.1
Unique NameTc03v2_t004520.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1161
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprotein TIFY 6B, transcript variant X2
NotePutative Protein TIFY 6B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604385
GenbankXM_007036832.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g004520Tc03v2_g004520Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p004520.1Tc03v2_p004520.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto149421auto149421Theobroma cacaoexon
exon-auto149422auto149422Theobroma cacaoexon
exon-auto149423auto149423Theobroma cacaoexon
exon-auto149424auto149424Theobroma cacaoexon
exon-auto149425auto149425Theobroma cacaoexon
exon-auto149426auto149426Theobroma cacaoexon
exon-auto149427auto149427Theobroma cacaoexon
exon-auto149428auto149428Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto149429auto149429Theobroma cacaoCDS
CDS-auto149430auto149430Theobroma cacaoCDS
CDS-auto149431auto149431Theobroma cacaoCDS
CDS-auto149432auto149432Theobroma cacaoCDS
CDS-auto149433auto149433Theobroma cacaoCDS
CDS-auto149434auto149434Theobroma cacaoCDS
CDS-auto149435auto149435Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t004520.1 ID=Tc03v2_t004520.1|Name=Tc03v2_t004520.1|organism=Theobroma cacao|type=mRNA|length=1161bp
ATGGAGAGAGATTTTATGGGTTTGGGTTCAAAGCATGCTCCAGTTACTGT
CAAAGAGGAGGCCTGTGAAGGGCCTAAGGATTCAGTATTCTTAAGGGGTT
CAGGGATGCAGTTGTCTTTCTCAAACAAGGTATCTGCCATTCCTCAGTTC
CTGTCTTTCAAGGCTGCTCAAGAAGATAGGCTGAGGAAGACTGCTCATGA
TCCTCTAGTGTCATCTGGATTTATGGCTAAACCAACTGCTGATTCTAACC
CGAGACCATATTCTGGCTTGACCCAGAAACAACGGGGAAACCACTACACA
GTGACAACATTTGGTCTGCAACAGTTTGATGGACACCAACCCCACTGTTC
TCAGGAAGTGAGGTTATTTCCTGTCTCCAGCCAGCCGAATCAAACAATTG
CAGTTTCTATGAGCACTCCTCTTCTCCAGTCCCATCTTGTTTCCACTGGA
CAGAATACAATTGGTAATACAGTAACCCCACAACCTTTTGCAGGAGTCCC
AATCATGGCTCCCCCTGTATCTGTTGTTCCTCCATCAAGTTCCATTATTG
GTACAACTGAGCTTAGGAATGCTGCCAAATCTTCTCAGGCACCATCTCAG
TTGACTATCTTTTATGCTGGTTCTGTGTGTGTGTATGATGATGTGTCTCC
TGAGAAGGCCCAGGCTATTATGTTATTGGCTGGAAATGGGTCTTCTGCAG
CTCAGAGTAAATCGACTCCCGTGACTCAAGCACAGGCACCTATGCCACGA
CCTTGTGCTGCTGATGGTTTTGTTGGAAACAATAGCTCTACCATGTCACC
ATGCTCAGGCTTTCCAGGTCCTATTTCTGTAACCTCCCATGTCAGTTTAC
AGCCAGGTGAAGGATCTAGTGGCACCAATGATCTAACAGCTGCCACACGA
GTTGTAGCTATAACATCTTCTAATAATCAACCAGAGCGTCCCAGAGTGGT
TAATTCAGTAGGATCTGCTGCAACAAGTCTAATTCCAGCAGTAGCTGTGC
CTCAGGCTCGTAAAGCATCCTTGGCTCGATTTTTAGAGAAGCGTAAAGAA
AGGGTAACAAGCACCTCTCCATACAATATCAGCAAGAAATCGCCTGGATC
TGATGATATAAGTTTCTCCGTGACTTCTGCTGGATCCAGTCCTCGACCAG
CCGTCAACTAG
back to top

protein sequence of Tc03v2_p004520.1

>Tc03v2_p004520.1 ID=Tc03v2_p004520.1|Name=Tc03v2_p004520.1|organism=Theobroma cacao|type=polypeptide|length=387bp
MERDFMGLGSKHAPVTVKEEACEGPKDSVFLRGSGMQLSFSNKVSAIPQF
LSFKAAQEDRLRKTAHDPLVSSGFMAKPTADSNPRPYSGLTQKQRGNHYT
VTTFGLQQFDGHQPHCSQEVRLFPVSSQPNQTIAVSMSTPLLQSHLVSTG
QNTIGNTVTPQPFAGVPIMAPPVSVVPPSSSIIGTTELRNAAKSSQAPSQ
LTIFYAGSVCVYDDVSPEKAQAIMLLAGNGSSAAQSKSTPVTQAQAPMPR
PCAADGFVGNNSSTMSPCSGFPGPISVTSHVSLQPGEGSSGTNDLTAATR
VVAITSSNNQPERPRVVNSVGSAATSLIPAVAVPQARKASLARFLEKRKE
RVTSTSPYNISKKSPGSDDISFSVTSAGSSPRPAVN*
back to top