Tc03v2_t000780.2

Overview
NameTc03v2_t000780.2
Unique NameTc03v2_t000780.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length639
Properties
Property NameValue
NotePNAS-3 related isoform 2
Model evidenceSupporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Productputative exosome complex component rrp40, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603897
GenbankXM_018117967.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g000780Tc03v2_g000780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p000780.2Tc03v2_p000780.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto141721auto141721Theobroma cacaoexon
exon-auto141722auto141722Theobroma cacaoexon
exon-auto141723auto141723Theobroma cacaoexon
exon-auto141724auto141724Theobroma cacaoexon
exon-auto141725auto141725Theobroma cacaoexon
exon-auto141726auto141726Theobroma cacaoexon
exon-auto141727auto141727Theobroma cacaoexon
exon-auto141728auto141728Theobroma cacaoexon
exon-auto141729auto141729Theobroma cacaoexon
exon-auto141730auto141730Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto141731auto141731Theobroma cacaoCDS
CDS-auto141732auto141732Theobroma cacaoCDS
CDS-auto141733auto141733Theobroma cacaoCDS
CDS-auto141734auto141734Theobroma cacaoCDS
CDS-auto141735auto141735Theobroma cacaoCDS
CDS-auto141736auto141736Theobroma cacaoCDS
CDS-auto141737auto141737Theobroma cacaoCDS
CDS-auto141738auto141738Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t000780.2 ID=Tc03v2_t000780.2|Name=Tc03v2_t000780.2|organism=Theobroma cacao|type=mRNA|length=639bp
ATGACCAACCAGACCATCATGCTAGGTGGTGGTCTCCGTCAGGATTGTGA
TGCTATTTCTGTGATGAAGGCTGGAACACTTAGGTTCTCAAAACCAAATA
AGTACTGGGTTGAAAGTTCTCAGAAAAGGTATACTCCTTGCGTGGAAGAT
ACTGTTCTTGGTATTGTGGTGGACTCGAAAGCAGATAATTTTCTTATTGA
CATCAAAGGACCTGTGTTGGCCTTTTTGCCTGTTCTTGCATTTGAAGGGG
GGACCAGGAGGAATATACCGAAGTTTGAGGTTGGTACTCTTCTTTATCTC
CGAGTTGTGAAGGCAAACTTTGGCATGAACCCTGAACTGTCCTGCACTGA
TGCCAGTGGAAAAGCAGCTGAATTTGGCCCCCTCAAAGATGGATACATGT
TTGAAACTTCAACTGGTCTATCAAGAAAGCTGTTAAGTTCACCAACATGT
CCAGTTCTTGAGGCTCTTGGCAAGAAACTCTCCTTTGAAATAGCTGTTGG
CTTAAATGGCCGGGTTTGGGTGAATGCTGCCACTCCAGACACCATCGTCG
TTGTTGCTAACGCAATCATGAACTCAGAATCCCTAAGTGGAGCGCAGCAG
ATAATTATGGTGGAGCATTTGCTTAAGAACATCCAATGA
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protein sequence of Tc03v2_p000780.2

>Tc03v2_p000780.2 ID=Tc03v2_p000780.2|Name=Tc03v2_p000780.2|organism=Theobroma cacao|type=polypeptide|length=213bp
MTNQTIMLGGGLRQDCDAISVMKAGTLRFSKPNKYWVESSQKRYTPCVED
TVLGIVVDSKADNFLIDIKGPVLAFLPVLAFEGGTRRNIPKFEVGTLLYL
RVVKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTC
PVLEALGKKLSFEIAVGLNGRVWVNAATPDTIVVVANAIMNSESLSGAQQ
IIMVEHLLKNIQ*
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