Tc02v2_t031340.1

Overview
NameTc02v2_t031340.1
Unique NameTc02v2_t031340.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1116
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productarogenate dehydratase/prephenate dehydratase 1, chloroplastic
NoteArogenate dehydratase/prephenate dehydratase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610582
GenbankXM_018116100.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g031340Tc02v2_g031340Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p031340.1Tc02v2_p031340.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto139409auto139409Theobroma cacaoexon
exon-auto139410auto139410Theobroma cacaoexon
exon-auto139411auto139411Theobroma cacaoexon
exon-auto139412auto139412Theobroma cacaoexon
exon-auto139413auto139413Theobroma cacaoexon
exon-auto139414auto139414Theobroma cacaoexon
exon-auto139415auto139415Theobroma cacaoexon
exon-auto139416auto139416Theobroma cacaoexon
exon-auto139417auto139417Theobroma cacaoexon
exon-auto139418auto139418Theobroma cacaoexon
exon-auto139419auto139419Theobroma cacaoexon
exon-auto139420auto139420Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto139421auto139421Theobroma cacaoCDS
CDS-auto139422auto139422Theobroma cacaoCDS
CDS-auto139423auto139423Theobroma cacaoCDS
CDS-auto139424auto139424Theobroma cacaoCDS
CDS-auto139425auto139425Theobroma cacaoCDS
CDS-auto139426auto139426Theobroma cacaoCDS
CDS-auto139427auto139427Theobroma cacaoCDS
CDS-auto139428auto139428Theobroma cacaoCDS
CDS-auto139429auto139429Theobroma cacaoCDS
CDS-auto139430auto139430Theobroma cacaoCDS
CDS-auto139431auto139431Theobroma cacaoCDS
CDS-auto139432auto139432Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t031340.1 ID=Tc02v2_t031340.1|Name=Tc02v2_t031340.1|organism=Theobroma cacao|type=mRNA|length=1116bp
ATGGAGCACGGTGAAGAGTTGACGAATTCCTTTGCCAACAAAGACAAGAA
GAGCGTGTCATCCGGTCCGGCTTTCCATTCCCAACAACATTTGCAGAGTC
ATGAAAGTCACAGGTCAGTAAGCTCCTCCGTTCAAGTTGGCAAAGCATCT
GCTACTCATAACCAAGGAAGGAAATTCCACAAGGATTTGACTTCTCTCCC
AAAGCCATTAACTGTTGCTGATTTATCAGCCACTCCTGATGATTCTTCAA
AGGTGCGGATATCATTTAAGGGGACACTAGGTTCTTACAATGAGGATGCT
GCACTCAAAGCCTACCCTAAATGTAAAACAGTACCCTGTGATGAGTTTGA
AGATGCATTTAAGGCAGTTGAATTATGGCTAGCTGAAAAGGCAGTTCTTC
CAATTGAGAATTCTTCTGGCGGTAGCATCCATCGCAACTATGATTTACTC
CTTCGTCATAGGCTTCATATTGTTGGTGAGGTGCAGCTGCCTGTCAATTT
CTGTCTACTAGCTCTGCCAGGGGTCAGAATTGAGCAGTTGAAACGAGTGC
TAAGTCATCCCCAGGCACTTGCCCTGAGTGACATTTTCCTGAGTAAGTTG
GGTGTAGCCAGGGAAAATGTTGATGATACAGCTAGTGCTGCTCAGTACGT
AGCCTCAAATGGCCTGAGGGATGCTGCTGTTGTTGCAAGTATTAGAGCTG
CACAAGTCTATGGACTTAATGTACTTGCTGAGAAAATTCAGGATGACCCT
GACAATATCACTCGGTTTCTGGTACTTGCTAGGGATCCAATAATTTCAAG
GACTGATAAGCCCTTTAAGACAAGTATTGTATTTACTTTGGAAGAAGGGC
CTGGGATATTGTTTAAAGCATTGGCAGTGTTTGCACTGAGAGACATAAAT
TTGACAAAGATTGAAAGTCGGCCCCAGAGAAAACGGCCATTAAGAGTAGT
TGATGACTCCAACACTGGGGCAGCCAAGTACTTTGATTATCTTTTCTATA
TTGATTTTGAAGCTTCTATGGCTGAGCCTCGTGCACAAAATGCTTTGGGG
CATTTGCAGGAATTTGCAACATTTCTTAGAGTACTTGGTTGCTATCCCAT
GGACACGACTTTGTAG
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protein sequence of Tc02v2_p031340.1

>Tc02v2_p031340.1 ID=Tc02v2_p031340.1|Name=Tc02v2_p031340.1|organism=Theobroma cacao|type=polypeptide|length=372bp
MEHGEELTNSFANKDKKSVSSGPAFHSQQHLQSHESHRSVSSSVQVGKAS
ATHNQGRKFHKDLTSLPKPLTVADLSATPDDSSKVRISFKGTLGSYNEDA
ALKAYPKCKTVPCDEFEDAFKAVELWLAEKAVLPIENSSGGSIHRNYDLL
LRHRLHIVGEVQLPVNFCLLALPGVRIEQLKRVLSHPQALALSDIFLSKL
GVARENVDDTASAAQYVASNGLRDAAVVASIRAAQVYGLNVLAEKIQDDP
DNITRFLVLARDPIISRTDKPFKTSIVFTLEEGPGILFKALAVFALRDIN
LTKIESRPQRKRPLRVVDDSNTGAAKYFDYLFYIDFEASMAEPRAQNALG
HLQEFATFLRVLGCYPMDTTL*
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