Tc02v2_t030790.2

Overview
NameTc02v2_t030790.2
Unique NameTc02v2_t030790.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1383
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 97 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Producttranscription factor HBP-1b(c38), transcript variant X2
NoteTranscription factor PERIANTHIA
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610523
GenbankXM_018115975.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g030790Tc02v2_g030790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p030790.2Tc02v2_p030790.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto138343auto138343Theobroma cacaoexon
exon-auto138344auto138344Theobroma cacaoexon
exon-auto138345auto138345Theobroma cacaoexon
exon-auto138346auto138346Theobroma cacaoexon
exon-auto138347auto138347Theobroma cacaoexon
exon-auto138348auto138348Theobroma cacaoexon
exon-auto138349auto138349Theobroma cacaoexon
exon-auto138350auto138350Theobroma cacaoexon
exon-auto138351auto138351Theobroma cacaoexon
exon-auto138352auto138352Theobroma cacaoexon
exon-auto138353auto138353Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto138354auto138354Theobroma cacaoCDS
CDS-auto138355auto138355Theobroma cacaoCDS
CDS-auto138356auto138356Theobroma cacaoCDS
CDS-auto138357auto138357Theobroma cacaoCDS
CDS-auto138358auto138358Theobroma cacaoCDS
CDS-auto138359auto138359Theobroma cacaoCDS
CDS-auto138360auto138360Theobroma cacaoCDS
CDS-auto138361auto138361Theobroma cacaoCDS
CDS-auto138362auto138362Theobroma cacaoCDS
CDS-auto138363auto138363Theobroma cacaoCDS
CDS-auto138364auto138364Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t030790.2 ID=Tc02v2_t030790.2|Name=Tc02v2_t030790.2|organism=Theobroma cacao|type=mRNA|length=1383bp
ATGCAGAGCTTCAAAGCTGCAGCTCCTACTAACCCAGACATGTTTTGCCA
CACTTCTTTTTTCCTCAGAGGAGAGGATTGTAATAGCCGTCACCAGACGC
GTTTCTCGGATCTTGGAGAGCTTGATCATCCCGCTTCTGCTTTTCAGCAC
GATGATGCTGTTGATTTAAGCCCAAGCTCCATTTTTAGTTTAAAATCCAG
CAATGTTGCTGTTGTTGCTAATAGCTTCAACTATGGTTCCTTGAACACGA
GCATTGGGGCAACAGAGATAGTTTCAAGTGGAACGGGGTGTTTGGACACA
GGGCAGTTCATGTACCAGAAAGGGACAACGTTTGGTGCCTCATTGGGAAA
TGGCCATATTGAAAACTGGGCTGACTCTGGCCTCGCAGATAATAGCCAAC
AGACTGACACTTCTACTGATGTCGACAATGATGATAAAAACCAGCTTAAT
GGTGTTCGACATGGAGCTATTATAACCGTGGATTCTGTGGATGAGTCCAA
GCCAAAAACTGGTGACCAAAAGACACTTCGTAGGCTGGCACAGAATCGAG
AAGCTGCGAGGAAGAGTAGATTGAGGAAAAAAGCATATGTCCAGCAGCTT
GAGAATAGTCGACTTAGGCTTACACAACTAGAGCAGGAGCTTCAAAGAGC
ACGACAGCAGGGTATTTTTATCTCGTCTGGACTTTCTGGGGACCATGGCC
ATTCAGTTGCTGGAAATGGGGCCTTGGCCTTCGACATGGACTATGCTCAC
TGGCTTGACGATCATCAGCGGCTGATAAATGACCTAAGATCTGCTGTAAA
TTCTCACATGGGAGATAATGAATTGCGCATTCTTGTTGAGTGTGTCATGG
CACATTATGATGAGGTTTTCAGGCTAAAAAGCATTGGTGCTAAGGCTGAT
GTATTTCACATGCTTTCTGGTATGTGGAAAACACCTGCAGAGAGGTGTTT
CATGTGGTTGGGAGGATTTCGTTCATCTGAACTTCTCAAGATCCTTGGAA
ACCACCTTGAGCCTTTGACAGACCAACAATTAATGGGCATATGTAATCTG
CAGCAGTCCTCCCAACAGGCTGAAGATGCCTTATCACAAGGCATGGAAGC
GCTGCAACAATCTCTAGTAGACACCCTTTCATCTGCATGTTTGGGTCCTA
CTGGTTCTGGAAATGTTGCAGACTATATGGGACAGATGGCAATTGCCATG
GGCAAGCTAGCCACATTGGAGAACTTCCTTCACCAGGCTGACCTCTTGAG
ACAACAAACCCTGCAACAAATGCATCGAATTTTGACTACTCGCCAAGCAG
CCCGCGCCCTTCTAGTTATTAGTGATTACACTTCTCGGCTCCGGGCACTT
AGCTCTTTATGGTTAGCGCGCCCTAGAAATTGA
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protein sequence of Tc02v2_p030790.2

>Tc02v2_p030790.2 ID=Tc02v2_p030790.2|Name=Tc02v2_p030790.2|organism=Theobroma cacao|type=polypeptide|length=461bp
MQSFKAAAPTNPDMFCHTSFFLRGEDCNSRHQTRFSDLGELDHPASAFQH
DDAVDLSPSSIFSLKSSNVAVVANSFNYGSLNTSIGATEIVSSGTGCLDT
GQFMYQKGTTFGASLGNGHIENWADSGLADNSQQTDTSTDVDNDDKNQLN
GVRHGAIITVDSVDESKPKTGDQKTLRRLAQNREAARKSRLRKKAYVQQL
ENSRLRLTQLEQELQRARQQGIFISSGLSGDHGHSVAGNGALAFDMDYAH
WLDDHQRLINDLRSAVNSHMGDNELRILVECVMAHYDEVFRLKSIGAKAD
VFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNHLEPLTDQQLMGICNL
QQSSQQAEDALSQGMEALQQSLVDTLSSACLGPTGSGNVADYMGQMAIAM
GKLATLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYTSRLRAL
SSLWLARPRN*
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