Tc02v2_t029610.1

Overview
NameTc02v2_t029610.1
Unique NameTc02v2_t029610.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1056
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productagamous-like MADS-box protein AGL30, transcript variant X2
NoteAgamous-like MADS-box protein AGL30
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610380
GenbankXM_007046001.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g029610Tc02v2_g029610Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p029610.1Tc02v2_p029610.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto136299auto136299Theobroma cacaoexon
exon-auto136300auto136300Theobroma cacaoexon
exon-auto136301auto136301Theobroma cacaoexon
exon-auto136302auto136302Theobroma cacaoexon
exon-auto136303auto136303Theobroma cacaoexon
exon-auto136304auto136304Theobroma cacaoexon
exon-auto136305auto136305Theobroma cacaoexon
exon-auto136306auto136306Theobroma cacaoexon
exon-auto136307auto136307Theobroma cacaoexon
exon-auto136308auto136308Theobroma cacaoexon
exon-auto136309auto136309Theobroma cacaoexon
exon-auto136310auto136310Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto136311auto136311Theobroma cacaoCDS
CDS-auto136312auto136312Theobroma cacaoCDS
CDS-auto136313auto136313Theobroma cacaoCDS
CDS-auto136314auto136314Theobroma cacaoCDS
CDS-auto136315auto136315Theobroma cacaoCDS
CDS-auto136316auto136316Theobroma cacaoCDS
CDS-auto136317auto136317Theobroma cacaoCDS
CDS-auto136318auto136318Theobroma cacaoCDS
CDS-auto136319auto136319Theobroma cacaoCDS
CDS-auto136320auto136320Theobroma cacaoCDS
CDS-auto136321auto136321Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t029610.1 ID=Tc02v2_t029610.1|Name=Tc02v2_t029610.1|organism=Theobroma cacao|type=mRNA|length=1056bp
ATGGGAAGGGTTAAGCTAAAGATAAAGAAGTTAGAGAACACAAATGGCCG
TCAGGTGACCTATGCCAAAAGGAAACATGGCATCATGAAGAAGGCAAATG
AGCTATCTATCCTATGTGATATAGAGATTATCCTCCTTATGTTCTCCCCG
ACTGGCAAGCCCTCTTTATGCAGTGGGAAGCGCAGTAGCATTGAGGAAAT
CATTGCAAAGTTTGCTCAACTCACTCCACAGGAACGGGCAAAAAGGAAGT
TGGAAAGCCTTGAAGCACTGAAAAAAACATTCAAGAAGTTGGACCATGAT
GTAAATGTTCATGAATTTCTGGGTACAAGTACACAAACAATAGAGGACCT
GACTAACCAAGCAAGGTTATTGCAGACTCAGCTTTCTGAAATACACAGGA
GACTGAGCTGTTGGACTAACCTAGACAAGATCAACAATGTAGAACATTTG
GGGCAAGTGGAAGATACACTCAAGGAATATCTAAATCAAATTCAAGCCCA
TAAGGAAACTTTAGGAAAGCAACAGCTTCTATCATTAGAATGCACAAGTC
AGTTCCAAAATGAAATGCATGTACCCTTTAGAATGGGCGCTGAGCAACAG
CTGCAACCTCTCGCATGGATACCTAATAATGACAGTAGACACATGGCCTT
ACCCGAGGACCCAAATTTGATTACCCACAGGGATGTGGAGTGCTCTGCAA
GTTCTTCTTTTGGAAGTTATTCCGGTTACTTTGGCACTGCTAAAAGTTCT
GAACTGTCTAGTTCTGGACAAGAAAATGGCATACTCAACGATTTGAGTGG
TAATCCATCATTACAGCTGCAACTGGGTGGACAATACCCCTACTTGTCAT
ATAATCTCAATATACTTAATGATGCCAAATTCCCACCGGTGGCAGAGATG
AACTTTCAGGAAACTCCTGCAGATTATAATGTTAATGGAGTCCTAGAAGG
TCCTAGAGCTGGATATGACACAACCCAAGGTAGTTGGGCTTCCACCTCTG
GGCCATGTGCTGTTACTATGTTTGATGAGCCTTTGTATTCGCGACAACTA
AACTGA
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protein sequence of Tc02v2_p029610.1

>Tc02v2_p029610.1 ID=Tc02v2_p029610.1|Name=Tc02v2_p029610.1|organism=Theobroma cacao|type=polypeptide|length=352bp
MGRVKLKIKKLENTNGRQVTYAKRKHGIMKKANELSILCDIEIILLMFSP
TGKPSLCSGKRSSIEEIIAKFAQLTPQERAKRKLESLEALKKTFKKLDHD
VNVHEFLGTSTQTIEDLTNQARLLQTQLSEIHRRLSCWTNLDKINNVEHL
GQVEDTLKEYLNQIQAHKETLGKQQLLSLECTSQFQNEMHVPFRMGAEQQ
LQPLAWIPNNDSRHMALPEDPNLITHRDVECSASSSFGSYSGYFGTAKSS
ELSSSGQENGILNDLSGNPSLQLQLGGQYPYLSYNLNILNDAKFPPVAEM
NFQETPADYNVNGVLEGPRAGYDTTQGSWASTSGPCAVTMFDEPLYSRQL
N*
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