Tc02v2_t025800.2

Overview
NameTc02v2_t025800.2
Unique NameTc02v2_t025800.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2211
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productprotein CHROMATIN REMODELING 19, transcript variant X3
NoteProtein CHROMATIN REMODELING 19
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609933
GenbankXM_018116123.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g025800Tc02v2_g025800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p025800.2Tc02v2_p025800.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto128429auto128429Theobroma cacaoexon
exon-auto128430auto128430Theobroma cacaoexon
exon-auto128431auto128431Theobroma cacaoexon
exon-auto128432auto128432Theobroma cacaoexon
exon-auto128433auto128433Theobroma cacaoexon
exon-auto128434auto128434Theobroma cacaoexon
exon-auto128435auto128435Theobroma cacaoexon
exon-auto128436auto128436Theobroma cacaoexon
exon-auto128437auto128437Theobroma cacaoexon
exon-auto128438auto128438Theobroma cacaoexon
exon-auto128439auto128439Theobroma cacaoexon
exon-auto128440auto128440Theobroma cacaoexon
exon-auto128441auto128441Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto128442auto128442Theobroma cacaoCDS
CDS-auto128443auto128443Theobroma cacaoCDS
CDS-auto128444auto128444Theobroma cacaoCDS
CDS-auto128445auto128445Theobroma cacaoCDS
CDS-auto128446auto128446Theobroma cacaoCDS
CDS-auto128447auto128447Theobroma cacaoCDS
CDS-auto128448auto128448Theobroma cacaoCDS
CDS-auto128449auto128449Theobroma cacaoCDS
CDS-auto128450auto128450Theobroma cacaoCDS
CDS-auto128451auto128451Theobroma cacaoCDS
CDS-auto128452auto128452Theobroma cacaoCDS
CDS-auto128453auto128453Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t025800.2 ID=Tc02v2_t025800.2|Name=Tc02v2_t025800.2|organism=Theobroma cacao|type=mRNA|length=2211bp
ATGATACCAAAAAAAAATCTTAAAATGAAGCGCGTTTTTGACGAAGTCTC
AGACGAAGAATGGGAGAACCACTCTTTCAAGCCTTCTCGTGTTTTAAGGA
AAAACCCTAGCCCTCCTCCAATTGAATCTTTCGCCTTCAATTCCCGTACG
GATTCTAGTTTTTCCGACCAAAGCAGCGACGATTGCGTCGAAGTCGAACA
ATTGGAGGACGACGATGTTGAGCCCGAGGACGCCGGGCGGGTCAATCGTG
CCCGTCGATTCGTGATTGACGACGACGACGAAGAAGAAGAAGATTACGGA
AAGGACGGCGATGAAAATGGTTGTGAGGAGGTGTATGATGTTGAGTCGAG
TGAAGAGGAGGAATTACAAGAGGATGACGTGGTAGGAAAAGCGTTGCAGA
AGTGCTCTAAAATATCGGCGGAGCTTCGGAAGGAGCTCTACGGGAGTTCC
GGTGCTTCTTGTGAACGATACGCCGAAGTAGAAGCTTCTTCTGTGAGAAT
CGTTACACAGAATGATATTGATATAGCTTGTGGGGCAGTCGATTCGGATT
TTCAGCCAGTTCTCAAGCCATACCAACTGGTCGGTGTAAACTTTCTTCTT
CTGTTGCATCGCAAGGGTATTGGAGGAGCTATTTTGGCAGATGAAATGGG
TCTTGGGAAAACCATTCAGGCTATTACATATCTAACTTTGCTGAAACATT
TGAATAATGATCCTGGTCCCCATTTAATAGTTTGTCCTGCCTCAGTCTTG
GAAAACTGGGAAAGAGAACTTAAGAAGTGGTGTCCATCATTTTCTGTACT
TCAGTATCATGGTGCTGGCCGAGCAGCTTACTCAAAAGAGTTGAGCTATT
TGTCCAAAGCTGGATTACCACCTCCATTTAATGTTCTTCTGGTGTGTTAT
TCACTTTTTGAACGACACAGTGTGCAGCAGAAGGATGATCGTAAAATTCT
GAAACGTTGGCGTTGGAGCTGTGTGCTAATGGATGAGGCCCATGCTTTGA
AGGACAAAAACAGCTATAGGTGGAAAAATCTAATGTCAGTTGCTCGAAAT
GCAAACCAGCGTCTTATGCTAACAGGCACACCACTGCAAAATGATTTACA
TGAGCTGTGGTCATTGTTAGAGTTCATGATGCCTGATCTTTTTGCCACTG
AGGATGTAGACTTGAAGAAGCTGCTAAATGCGGACGATAGGGAGTTGATT
GGTCGTATGAAGTCCATGTTGGGACCATTCATCTTGAGGCGTTTGAAATC
AGATGTGATGCAGCAACTTGTCCCAAAGATACAACGGGTTGAGTATGTGA
CTATGGAAAAGCAACAAGAAGATGCTTATAGGGAATCCATAGAGGAGTAT
CGTACAATTTCACGAGCACGCATTGCAAAGCTTTCAGAGTCTGACTTGAA
TAATATTGTTGGAATTCTTCCTCGACGTCAGATCTCAAACTATTTTATTC
AGTTTCGCAAGATTGCAAATCATCCATTATTGGTGAGGCGAATTTATGAT
GATGAGGATGTTGTTCGCTTTGCTAAAAGGTTACATTCAATGGGTGTTTT
CGAATGTACCTTGGACAGAGTAATTGAGGAACTAAAGAATTACAATGACT
TCTCTATTCATCGGCTTTTACTTCATTATGGAATTACTGGTGGTAAACAA
ACTCTTTCGGATGAACATGTTATGCTTTCAGCTAAATGCCAGGCATTAGC
AGAGCTTCTCCCTTCACTCAAGAAAAGTGGGCATCGGGTTCTGATTTTTA
GCCAGTGGACTTCGATGCTTGATATCTTAGAGTGGACTTTAGATGTCATT
GGGGTTACGTATAGACGGCTTGATGGAAGTACTCAGGTGACTGATAGGCA
GACCATAGTCGATAATTTCAATAATGACACTTCTATATTTGCATGCTTGT
TGTCTACAAGAGCTGGAGGGCAGGGTTTGAACTTGACAGGAGCTGATACT
GTAGTTATTCATGACATGGATTTTAATCCACAGATTGACAGACAGGCTGA
AGATCGCTGCCATCGCATTGGCCAAACGAGGCCTGTTACCATATACAGGC
TGGTTACGAAAGGGACAGTTGATGAGAATGTTTATGAGATTGCAAAAAGG
AAGTTGACTCTGGATGCTGCAGTGCTAGAGTCTGGAATGGATGTAGACAA
CGACAGTGATACAGGCGAAAAAACAATGGGACAGATACTGTCATCCCTAC
TGATGAGCTAG
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protein sequence of Tc02v2_p025800.2

>Tc02v2_p025800.2 ID=Tc02v2_p025800.2|Name=Tc02v2_p025800.2|organism=Theobroma cacao|type=polypeptide|length=737bp
MIPKKNLKMKRVFDEVSDEEWENHSFKPSRVLRKNPSPPPIESFAFNSRT
DSSFSDQSSDDCVEVEQLEDDDVEPEDAGRVNRARRFVIDDDDEEEEDYG
KDGDENGCEEVYDVESSEEEELQEDDVVGKALQKCSKISAELRKELYGSS
GASCERYAEVEASSVRIVTQNDIDIACGAVDSDFQPVLKPYQLVGVNFLL
LLHRKGIGGAILADEMGLGKTIQAITYLTLLKHLNNDPGPHLIVCPASVL
ENWERELKKWCPSFSVLQYHGAGRAAYSKELSYLSKAGLPPPFNVLLVCY
SLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARN
ANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNADDRELI
GRMKSMLGPFILRRLKSDVMQQLVPKIQRVEYVTMEKQQEDAYRESIEEY
RTISRARIAKLSESDLNNIVGILPRRQISNYFIQFRKIANHPLLVRRIYD
DEDVVRFAKRLHSMGVFECTLDRVIEELKNYNDFSIHRLLLHYGITGGKQ
TLSDEHVMLSAKCQALAELLPSLKKSGHRVLIFSQWTSMLDILEWTLDVI
GVTYRRLDGSTQVTDRQTIVDNFNNDTSIFACLLSTRAGGQGLNLTGADT
VVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKR
KLTLDAAVLESGMDVDNDSDTGEKTMGQILSSLLMS*
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