Tc02v2_t023440.2

Overview
NameTc02v2_t023440.2
Unique NameTc02v2_t023440.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1554
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Producttwo-component response regulator ARR11, transcript variant X2
NotePutative Two-component response regulator ORR26
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609658
GenbankXM_007044889.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g023440Tc02v2_g023440Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p023440.2Tc02v2_p023440.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto123646auto123646Theobroma cacaoexon
exon-auto123647auto123647Theobroma cacaoexon
exon-auto123648auto123648Theobroma cacaoexon
exon-auto123649auto123649Theobroma cacaoexon
exon-auto123650auto123650Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto123651auto123651Theobroma cacaoCDS
CDS-auto123652auto123652Theobroma cacaoCDS
CDS-auto123653auto123653Theobroma cacaoCDS
CDS-auto123654auto123654Theobroma cacaoCDS
CDS-auto123655auto123655Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t023440.2 ID=Tc02v2_t023440.2|Name=Tc02v2_t023440.2|organism=Theobroma cacao|type=mRNA|length=1554bp
ATGGTCGAAAGTGGCTTCTCTTCTCCTCGACACGACGCTTTTCCTGCCGG
CCTCCGTGTTCTCGTCGTCGATGACGATCCTACATGGTTGAAGATTCTTG
AAAAGATGCTCAAAAAGTGTTCCTATGAAGTAACTACGTGTGGTCTTGCA
CGAGATGCTCTGAACTTGCTTCGTGAAAGGAAGGATGGCTATGACATTGT
AATCAGTGATGTTAACATGCCTGACATGGATGGGTTTAAACTTCTAGAAC
ATGTTGGACTGGAAATGGACTTACCTGTCATCATGATGTCCGTTGATGGG
GAAACAAGCCGAGTCATGAAAGGCGTCCAACATGGCGCTTGTGATTACCT
TCTAAAGCCTATAAGAATGAAAGAGCTTCGCAATATATGGCAGCATGTGT
TCAGAAAAAAGATACATGAAGTGAGAGACATTGAAAGTCTGGAAGGCAAT
GAAGGTCTTCAGATGACAAGAAGTGGCTCAGATCTGGTTGATGATGGGCA
CTTGCTTAGTGGAGAAGATATGAACTCTGCTAGAAAAAGAAAAGATGCTG
AAAACAAGCATGATGATAGAGACCTCAGTGATCCTTCTTCTACAAAGAAA
GCTAGAGTTGTTTGGACTGTAGACCTTCACCAAAAATTTGTCAAAGCCGT
AAATCAGATTGGATTTGATAAAGTTGGTCCTAAAAAGATACTTGACTTGA
TGAATGTACCATGGTTGACAAGAGAAAATGTTGCCAGCCACTTGCAGAAT
GTGGATCTCAATCATGAAGGTGACAAAAAAGGAATTACTTCAGCGCCTGT
GGCAGAGCCCAAAGGAGCTTTGTCTATAGATATTCCTGATCCCCATAAAG
CCCAGAGTTCACAGATAAGCTTTGATCATTCCCTTGGATCAGTTGATTCA
GGTCTTAAGTTTGCATTATTCAATTCTACCAACCAGACACGGTACTCCTG
GAGTGAAATTCCTGAAATTCAGTTCAAACAAGAGTGTGAACCATTGCAAT
TAGAGAATGGCTTCAGCCAACTACCACTGCCTGGTTCACAGCATCAAGTC
CAGACCGAATATTTACAACCTGCTGTATCCATTAGCTCTGGACCTTCCAT
AACTGAAAAAGAGGTTAGTAGCAGGCCTTTGTATGATGAGTATAGAAGCA
ATCATGTCAAACATTTAAGTCCAACAGAAGCAGTTGACTTGTTTCCTGTT
CCAAGCAGAAACCAAACGCTAAATAATCAAGTTTTCAACCCCATTTCTGC
TACTACATCAAGCATGAAAAATCAGGGCATAAGTCTGAATGACTTGGAAT
TTGCACAGAGAAACCTGAATGGGGGAGTAGGAGTACCTATTGCATCTTTA
AGTGAGGACTTACAGTTCTGTTGGCTTCAAGGTGAGTGTTATGCTATGAA
TATTGGTCTCCAGGATTTTGAGTGTATTGAGTATAACGATCCAGCACCCA
TTGCTGAAATTCCATTCCTCTTGTATGATGCACCAAGGTTTGACCACGAG
CATCTGTTTGACCCTACTGAATATGCTGCAATAGATCAAGGGTTGTTTGC
TTAG
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protein sequence of Tc02v2_p023440.2

>Tc02v2_p023440.2 ID=Tc02v2_p023440.2|Name=Tc02v2_p023440.2|organism=Theobroma cacao|type=polypeptide|length=518bp
MVESGFSSPRHDAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLA
RDALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDG
ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIESLEGN
EGLQMTRSGSDLVDDGHLLSGEDMNSARKRKDAENKHDDRDLSDPSSTKK
ARVVWTVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQN
VDLNHEGDKKGITSAPVAEPKGALSIDIPDPHKAQSSQISFDHSLGSVDS
GLKFALFNSTNQTRYSWSEIPEIQFKQECEPLQLENGFSQLPLPGSQHQV
QTEYLQPAVSISSGPSITEKEVSSRPLYDEYRSNHVKHLSPTEAVDLFPV
PSRNQTLNNQVFNPISATTSSMKNQGISLNDLEFAQRNLNGGVGVPIASL
SEDLQFCWLQGECYAMNIGLQDFECIEYNDPAPIAEIPFLLYDAPRFDHE
HLFDPTEYAAIDQGLFA*
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