Tc02v2_t013900.1

Overview
NameTc02v2_t013900.1
Unique NameTc02v2_t013900.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1770
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productprobable terpene synthase 9
NoteProbable terpene synthase 9
Cross References
External references for this mRNA
DatabaseAccession
GeneID18507029
GenbankXM_018115760.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013900Tc02v2_g013900Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013900.1Tc02v2_p013900.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto107516auto107516Theobroma cacaoexon
exon-auto107517auto107517Theobroma cacaoexon
exon-auto107518auto107518Theobroma cacaoexon
exon-auto107519auto107519Theobroma cacaoexon
exon-auto107520auto107520Theobroma cacaoexon
exon-auto107521auto107521Theobroma cacaoexon
exon-auto107522auto107522Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto107523auto107523Theobroma cacaoCDS
CDS-auto107524auto107524Theobroma cacaoCDS
CDS-auto107525auto107525Theobroma cacaoCDS
CDS-auto107526auto107526Theobroma cacaoCDS
CDS-auto107527auto107527Theobroma cacaoCDS
CDS-auto107528auto107528Theobroma cacaoCDS
CDS-auto107529auto107529Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013900.1 ID=Tc02v2_t013900.1|Name=Tc02v2_t013900.1|organism=Theobroma cacao|type=mRNA|length=1770bp
ATGAAAAAACTGATAGCTGCCCCTCCCTCCACTCTTCCTTGTTCTGCTGT
AATTGACTGCCACAGAAACTTGTTTTCACTATGGCTTACAACAGGGAGAA
AGCTAGGCCGATCAGGATTACTTCACTCTTTCACAATCAGTTCAAAGCCC
TGTTGCGTAGAAGCAAAGCAACGGCGATCAGCTAATTACCACCCTAGCAT
TTGGGACCCAAAAGTCATTGAATCCTTGACCACTCCATATTCGTATGAGT
TTCATGGTACTAAATTAAAGGAGTTGAAGAAAGAGGTTACAAGTTTGCTG
GCATTTGCCCCAGACCCTTGGGCTACATGGAAGCTAATCGACCTAATGCA
GCGTTTAGGTGTGGCCTACCATTTTGGCAAAGAGATTGATGAGGCTCTAA
ACAATGTCCTTAAAGAAACTGTAATCGGAGATCTTTATACAACTTCACTG
CTGTTCCGGATTCTACGTGAACATGCTTTTCCAATAAGCACAGACGTGTT
CAACAAATTCAGAGGTAGAGATGGGAAATTCGTGGACAGTTTACGAGGAG
ACATGGCAGGGCTTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGCAT
GGAGAAGATGTTATGGACGAGGCCCAGAAATTCAGTGCAGAGCATCTCAA
GTCCTCATTGGGGAAGATAGGTAGTAATTTAGCTTTCCAAGTGCAACAGT
CCCTACAAGTTCCTTTACATTGGAAGATGCCCCGGATTGAGGCAAGGACT
TTCATAGATGTCTACCAAAAGGATGACTCGAAGAACTCAATTTTGATTGA
GCTAGCCAAGCTAGATTTCAATCTTGTGCAAGCAGTTCACCAGCAAGAAC
TCAAAGAGTTGGCGACGTGGTGGAGAGACTTAGGGTTTAAAGAGAAGATG
AGTTTTTCACGGGATCGATTGATGGAAAATTATATCTGGGCAATGCGAAT
CATCTTCGAGCCTCAATTCTCCAAATGCAGGATTTACCTCACCAGATTCG
TATGCATTTTAACCGCGATTGATGACATGTATGATGTATATGGAATGCTG
GATGAACTTGAACTCTTTACCAGAGCAGTAAATCAATGGGATATTGGGGC
CATGAAGGACCTTCCTGAATATATGAAGCCATGCTACTTAGCCTTGTTCA
ACTTTGTTAACGAATTGGGACATGATATCCTAATAGATCATGGATTGGAT
ATCACCCACTACATTAGGCAAGAGTGGAAAAAACTTTGTGCATCATATTT
AACTGAAGCGAGATGGTTTTACAACGGGCACACACCAGTCCTGGAGGAGT
ATTTAGAAAACGCATGGATCTCAGTGGGTGGCCCTGCAGCCATAGTTCAT
GCTTATATTTTACAAGCAGGCTCAATGACAGAAAAATCTCTTGATTATTG
CTTCAAGCATGGGGTTGAGCTAATATATTGGTCGTCCCTAATCACCCGAC
TTGCCGATGATTTGGGTACTTCCAAGGCCGAGAGTGCTAGAGGAGACGTG
GCAAAATCAACAGAGTGCTACATGATTGAAACAGGAGCGTCCAAAGAAGA
AGCAAGAGATCACATTAAGGAATTGATGGCTCATTCATGGAAAAAGTTAA
ATGAGGAAAGCTACAAAAATTTACTACCAAGATCCATGATAAACATGTGC
TTAAACATGGCACGCACTGCTCAGTGCATCTTCCAGCACGGAGATGGAAT
TGGAACATCAACCGGAGTGACAAAGGATCTTTTGATGTCACTCATTGCCG
AACCTATCACAGCTGAATAG
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protein sequence of Tc02v2_p013900.1

>Tc02v2_p013900.1 ID=Tc02v2_p013900.1|Name=Tc02v2_p013900.1|organism=Theobroma cacao|type=polypeptide|length=590bp
MKKLIAAPPSTLPCSAVIDCHRNLFSLWLTTGRKLGRSGLLHSFTISSKP
CCVEAKQRRSANYHPSIWDPKVIESLTTPYSYEFHGTKLKELKKEVTSLL
AFAPDPWATWKLIDLMQRLGVAYHFGKEIDEALNNVLKETVIGDLYTTSL
LFRILREHAFPISTDVFNKFRGRDGKFVDSLRGDMAGLLSLYEASHLGMH
GEDVMDEAQKFSAEHLKSSLGKIGSNLAFQVQQSLQVPLHWKMPRIEART
FIDVYQKDDSKNSILIELAKLDFNLVQAVHQQELKELATWWRDLGFKEKM
SFSRDRLMENYIWAMRIIFEPQFSKCRIYLTRFVCILTAIDDMYDVYGML
DELELFTRAVNQWDIGAMKDLPEYMKPCYLALFNFVNELGHDILIDHGLD
ITHYIRQEWKKLCASYLTEARWFYNGHTPVLEEYLENAWISVGGPAAIVH
AYILQAGSMTEKSLDYCFKHGVELIYWSSLITRLADDLGTSKAESARGDV
AKSTECYMIETGASKEEARDHIKELMAHSWKKLNEESYKNLLPRSMINMC
LNMARTAQCIFQHGDGIGTSTGVTKDLLMSLIAEPITAE*
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