Tc02v2_t013590.6

Overview
NameTc02v2_t013590.6
Unique NameTc02v2_t013590.6
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2094
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productnucleolin 2, transcript variant X5
NoteNucleolin like 2 isoform 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608509
GenbankXM_007043246.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013590Tc02v2_g013590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013590.6Tc02v2_p013590.6Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto106617auto106617Theobroma cacaoexon
exon-auto106618auto106618Theobroma cacaoexon
exon-auto106619auto106619Theobroma cacaoexon
exon-auto106620auto106620Theobroma cacaoexon
exon-auto106621auto106621Theobroma cacaoexon
exon-auto106622auto106622Theobroma cacaoexon
exon-auto106623auto106623Theobroma cacaoexon
exon-auto106624auto106624Theobroma cacaoexon
exon-auto106625auto106625Theobroma cacaoexon
exon-auto106626auto106626Theobroma cacaoexon
exon-auto106627auto106627Theobroma cacaoexon
exon-auto106628auto106628Theobroma cacaoexon
exon-auto106629auto106629Theobroma cacaoexon
exon-auto106630auto106630Theobroma cacaoexon
exon-auto106631auto106631Theobroma cacaoexon
exon-auto106632auto106632Theobroma cacaoexon
exon-auto106633auto106633Theobroma cacaoexon
exon-auto106634auto106634Theobroma cacaoexon
exon-auto106635auto106635Theobroma cacaoexon
exon-auto106636auto106636Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto106637auto106637Theobroma cacaoCDS
CDS-auto106638auto106638Theobroma cacaoCDS
CDS-auto106639auto106639Theobroma cacaoCDS
CDS-auto106640auto106640Theobroma cacaoCDS
CDS-auto106641auto106641Theobroma cacaoCDS
CDS-auto106642auto106642Theobroma cacaoCDS
CDS-auto106643auto106643Theobroma cacaoCDS
CDS-auto106644auto106644Theobroma cacaoCDS
CDS-auto106645auto106645Theobroma cacaoCDS
CDS-auto106646auto106646Theobroma cacaoCDS
CDS-auto106647auto106647Theobroma cacaoCDS
CDS-auto106648auto106648Theobroma cacaoCDS
CDS-auto106649auto106649Theobroma cacaoCDS
CDS-auto106650auto106650Theobroma cacaoCDS
CDS-auto106651auto106651Theobroma cacaoCDS
CDS-auto106652auto106652Theobroma cacaoCDS
CDS-auto106653auto106653Theobroma cacaoCDS
CDS-auto106654auto106654Theobroma cacaoCDS
CDS-auto106655auto106655Theobroma cacaoCDS
CDS-auto106656auto106656Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013590.6 ID=Tc02v2_t013590.6|Name=Tc02v2_t013590.6|organism=Theobroma cacao|type=mRNA|length=2094bp
ATGGGAAAGTCAAGCAAGAAATCAACCCCCAAAGTTGAAGCAGCTCGTGA
TGTAGCTCCTCTTAAGTCTGGAAAGAAAGGCAAGAGAGAAGCTGAAGAAA
CTCCTGAAAAACAAGTGGTTGTGAAAAGACAGAAGAAAAACGATGGAGTA
GCACAGGCTATCGTAAAGGAGAAAGTTGAAGCAAAAACCCAGAAGAAGAA
GAAAGATGAAACCAGCAGTTCTTCGGATGACTCTTCTGATTCTGAGGATG
AACCTGTACCACAAAAGAAGCAGCCAGCTATTGTCAAGAATGGCTCTGTA
CCAGCAAAGAAAGCAAAACAAGCTAGCAGTTCAGATTCTTCTGAGTCTAG
TAGTGAGGAAGATTCATCCTCTGATGAAGAAGCAACTGCTCAGAAGAAAA
AACCAGTAGTTGCTAAAAATAGCTCTGTTCCAGCTGCTAAGGCAGTGAAA
ACCGAGAGTTCTGATTCATCTTCTGATGATGATTCTGATTCGGATGATGA
GCCTGCTGTAAAAACAAAGGTATCAGCAGCCGTTAAAAATGGCTCTGCAC
CTGTTAAGAAAGGAAAGGCCTCAAGCAGTTCAGATTCTTCAGATGAAGAT
AGTAGCTCGGATGAAGATGATGAAAAATCAAAGCCTGCCTCTAAGAAAGG
ACCTACCACTGTTCCCAAAAAGGGGTCAAGTGATAGTTCGGAAAGTGACA
GCTCTTCAGATGAGGATGTAAAGAAAGCAACTGTGGTGAAGCAAGTGTCT
GCTCCTACCCCAAAGAAAACAGAGAAATCCAGTAGTAGCTCTTCTGATGA
TAGTGATTCTGAGGAAGAAGAGGAAAATGAAGCTAAAGGTGATAAGAAAC
CTGTTACTGGCAAAACAGCTAAGAAAGAAGAGTCATCTAAAAGTTCATCA
GACACTGATTCCTCTGAGGATGAGGCTCCTTTGAACAAAGTTCCTGTTGC
TTCAAAAAGATCTCTCCCTACAGCTGGGGCAAAACAATCAAAACAGGAAA
GTGATGATAGTGATGATGATGATAGTGATGATGAAAGTGAGGATGAACAA
CCTGCAGCCAAAAAGTCAAAGGTTGCTTCAGATAGTGGAAAAGATGCTAA
AGTTGTCAAAAAAGTAAGCAGTGATGAAGAGGAGGGGTCTGAAGAATCAT
CTGATGAAGATGAGGAAAGTGATGATGAAGAAGAAACACCAAAGAAAAAA
GATACTGATGGTGAAATGGTGGATGCTACAACCCCACAGAAAATTACCAA
GCAGCAGGATTTTAAGTCTGCTAAGAAAGCTCCCCAAACTCCTGCAACGC
CTCAAGGTCAACCTACAGGATCAAAGACCTTGTTTGTTGGAAACCTACCT
TATCAAGTTGAACAAGCTGATGTAAAGAATTTCTTTAAAGATGCTGGTGA
GATTGTGGATATACGTTTTGCTACTGATGCTGAAGGGAACTTTAAGGGAT
TTGGACATGTTGAATTTGCTACAGCAGAGGCTGCACAGAAGGCTTTGGAA
TTGAATGGTGAATATTTGATGAATCGTTCTCTTAGACTTGATTTGGCCCG
TGAAAGGGGTGCATACACACCGTACAGTGGCAATGGGAACAATTCATTCC
AGAAAGGTGGAAGAAGTCAGACTCAAACAATTTTTGTCAAGGGGTTTGAT
CAATCTCTTGGTGAAGATGAGATTAGGAGTTCTTTGGAAGAGCACTTTGG
TTCTTGTGGAGAGATTTCTAGGGTGGCCATTCCAGTAGATCGGGAGACTG
GTGGTGTGAAAGGTTATGCTTACTTGGATTTCAACGATGGTGATAGTTTC
AACAAAGCTTTAGAACTTGATGGATCTGAACTAAGCAATTATTCCTTGTC
TGTGGATGAGGCAAAACCAAGAGGTGAATTCCGTGATGGTCCAGGCAGTG
GAAGAGGTGGTGGCAGGAGTGGTGGAAGGAGTGGGGGATGGAGTGGGGGA
AGGGATGGTGGTGGCCGTGGTGGTCGTGGTGGTCGGCGTGGGGGTGGTCG
ATTTGGTGGTGCTGGCAGAGGTCGTGGACCTAATAAGCCAAACCTTGCTG
CTGCTGGCACGGGAAGGAAGACAACTTTCAATGATGAGGATTAG
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protein sequence of Tc02v2_p013590.6

>Tc02v2_p013590.6 ID=Tc02v2_p013590.6|Name=Tc02v2_p013590.6|organism=Theobroma cacao|type=polypeptide|length=698bp
MGKSSKKSTPKVEAARDVAPLKSGKKGKREAEETPEKQVVVKRQKKNDGV
AQAIVKEKVEAKTQKKKKDETSSSSDDSSDSEDEPVPQKKQPAIVKNGSV
PAKKAKQASSSDSSESSSEEDSSSDEEATAQKKKPVVAKNSSVPAAKAVK
TESSDSSSDDDSDSDDEPAVKTKVSAAVKNGSAPVKKGKASSSSDSSDED
SSSDEDDEKSKPASKKGPTTVPKKGSSDSSESDSSSDEDVKKATVVKQVS
APTPKKTEKSSSSSSDDSDSEEEEENEAKGDKKPVTGKTAKKEESSKSSS
DTDSSEDEAPLNKVPVASKRSLPTAGAKQSKQESDDSDDDDSDDESEDEQ
PAAKKSKVASDSGKDAKVVKKVSSDEEEGSEESSDEDEESDDEEETPKKK
DTDGEMVDATTPQKITKQQDFKSAKKAPQTPATPQGQPTGSKTLFVGNLP
YQVEQADVKNFFKDAGEIVDIRFATDAEGNFKGFGHVEFATAEAAQKALE
LNGEYLMNRSLRLDLARERGAYTPYSGNGNNSFQKGGRSQTQTIFVKGFD
QSLGEDEIRSSLEEHFGSCGEISRVAIPVDRETGGVKGYAYLDFNDGDSF
NKALELDGSELSNYSLSVDEAKPRGEFRDGPGSGRGGGRSGGRSGGWSGG
RDGGGRGGRGGRRGGGRFGGAGRGRGPNKPNLAAAGTGRKTTFNDED*
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