Tc02v2_t013590.2

Overview
NameTc02v2_t013590.2
Unique NameTc02v2_t013590.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2181
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Productnucleolin 2, transcript variant X2
NoteNucleolin like 2 isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608509
GenbankXM_007043245.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013590Tc02v2_g013590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013590.2Tc02v2_p013590.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto106445auto106445Theobroma cacaoexon
exon-auto106446auto106446Theobroma cacaoexon
exon-auto106447auto106447Theobroma cacaoexon
exon-auto106448auto106448Theobroma cacaoexon
exon-auto106449auto106449Theobroma cacaoexon
exon-auto106450auto106450Theobroma cacaoexon
exon-auto106451auto106451Theobroma cacaoexon
exon-auto106452auto106452Theobroma cacaoexon
exon-auto106453auto106453Theobroma cacaoexon
exon-auto106454auto106454Theobroma cacaoexon
exon-auto106455auto106455Theobroma cacaoexon
exon-auto106456auto106456Theobroma cacaoexon
exon-auto106457auto106457Theobroma cacaoexon
exon-auto106458auto106458Theobroma cacaoexon
exon-auto106459auto106459Theobroma cacaoexon
exon-auto106460auto106460Theobroma cacaoexon
exon-auto106461auto106461Theobroma cacaoexon
exon-auto106462auto106462Theobroma cacaoexon
exon-auto106463auto106463Theobroma cacaoexon
exon-auto106464auto106464Theobroma cacaoexon
exon-auto106465auto106465Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto106466auto106466Theobroma cacaoCDS
CDS-auto106467auto106467Theobroma cacaoCDS
CDS-auto106468auto106468Theobroma cacaoCDS
CDS-auto106469auto106469Theobroma cacaoCDS
CDS-auto106470auto106470Theobroma cacaoCDS
CDS-auto106471auto106471Theobroma cacaoCDS
CDS-auto106472auto106472Theobroma cacaoCDS
CDS-auto106473auto106473Theobroma cacaoCDS
CDS-auto106474auto106474Theobroma cacaoCDS
CDS-auto106475auto106475Theobroma cacaoCDS
CDS-auto106476auto106476Theobroma cacaoCDS
CDS-auto106477auto106477Theobroma cacaoCDS
CDS-auto106478auto106478Theobroma cacaoCDS
CDS-auto106479auto106479Theobroma cacaoCDS
CDS-auto106480auto106480Theobroma cacaoCDS
CDS-auto106481auto106481Theobroma cacaoCDS
CDS-auto106482auto106482Theobroma cacaoCDS
CDS-auto106483auto106483Theobroma cacaoCDS
CDS-auto106484auto106484Theobroma cacaoCDS
CDS-auto106485auto106485Theobroma cacaoCDS
CDS-auto106486auto106486Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013590.2 ID=Tc02v2_t013590.2|Name=Tc02v2_t013590.2|organism=Theobroma cacao|type=mRNA|length=2181bp
ATGGGAAAGTCAAGCAAGAAATCAACCCCCAAAGTTGAAGCAGCTCGTGA
TGTAGCTCCTCTTAAGTCTGGAAAGAAAGGCAAGAGAGAAGCTGAAGAAA
CTCCTGAAAAACAAGTGGTTGTGAAAAGACAGAAGAAAAACGATGGAGTA
GCACAGGCTATCGTAAAGGAGAAAGTTGAAGCAAAAACCCAGAAGAAGAA
GAAAGATGAAACCAGCAGTTCTTCGGATGACTCTTCTGATTCTGAGGATG
AACCTGTACCACAAAAGAAGCAGCCAGCTATTGTCAAGAATGGCTCTGTA
CCAGCAAAGAAAGCAAAACAAGCTAGCAGTTCAGATTCTTCTGAGTCTAG
TAGTGAGGAAGATTCATCCTCTGATGAAGAAGCAACTGCTCAGAAGAAAA
AACCAGTAGTTGCTAAAAATAGCTCTGTTCCAGCTGCTAAGGCAGTGAAA
ACCGAGAGTTCTGATTCATCTTCTGATGATGATTCTGATTCGGATGATGA
GCCTGCTGTAAAAACAAAGGTATCAGCAGCCGTTAAAAATGGCTCTGCAC
CTGTTAAGAAAGGAAAGGCCTCAAGCAGTTCAGATTCTTCAGATGAAGAT
AGTAGCTCGGATGAAGATGATGAAAAATCAAAGCCTGCCTCTAAGAAAGG
ACCTACCACTGTTCCCAAAAAGGGGTCAAGTGATAGTTCGGAAAGTGACA
GCTCTTCAGATGAGGACACCACCCAAACAAAGAAATTGCCATTTTCTCTT
AATAAATTTGCATCTAGTGATAGCAGCTCTGAGGAGGATTCTGATGAAGA
GGATGTAAAGAAAGCAACTGTGGTGAAGCAAGTGTCTGCTCCTACCCCAA
AGAAAACAGAGAAATCCAGTAGTAGCTCTTCTGATGATAGTGATTCTGAG
GAAGAAGAGGAAAATGAAGCTAAAGGTGATAAGAAACCTGTTACTGGCAA
AACAGCTAAGAAAGAAGAGTCATCTAAAAGTTCATCAGACACTGATTCCT
CTGAGGATGAGGCTCCTTTGAACAAAGTTCCTGTTGCTTCAAAAAGATCT
CTCCCTACAGCTGGGGCAAAACAATCAAAACAGGAAAGTGATGATAGTGA
TGATGATGATAGTGATGATGAAAGTGAGGATGAACAACCTGCAGCCAAAA
AGTCAAAGGTTGCTTCAGATAGTGGAAAAGATGCTAAAGTTGTCAAAAAA
GTAAGCAGTGATGAAGAGGAGGGGTCTGAAGAATCATCTGATGAAGATGA
GGAAAGTGATGATGAAGAAGAAACACCAAAGAAAAAAGATACTGATGGTG
AAATGGTGGATGCTACAACCCCACAGAAAATTACCAAGCAGCAGGATTTT
AAGTCTGCTAAGAAAGCTCCCCAAACTCCTGCAACGCCTCAAGGTCAACC
TACAGGATCAAAGACCTTGTTTGTTGGAAACCTACCTTATCAAGTTGAAC
AAGCTGATGTAAAGAATTTCTTTAAAGATGCTGGTGAGATTGTGGATATA
CGTTTTGCTACTGATGCTGAAGGGAACTTTAAGGGATTTGGACATGTTGA
ATTTGCTACAGCAGAGGCTGCACAGAAGGCTTTGGAATTGAATGGTGAAT
ATTTGATGAATCGTTCTCTTAGACTTGATTTGGCCCGTGAAAGGGGTGCA
TACACACCGTACAGTGGCAATGGGAACAATTCATTCCAGAAAGGTGGAAG
AAGTCAGACTCAAACAATTTTTGTCAAGGGGTTTGATCAATCTCTTGGTG
AAGATGAGATTAGGAGTTCTTTGGAAGAGCACTTTGGTTCTTGTGGAGAG
ATTTCTAGGGTGGCCATTCCAGTAGATCGGGAGACTGGTGGTGTGAAAGG
TTATGCTTACTTGGATTTCAACGATGGTGATAGTTTCAACAAAGCTTTAG
AACTTGATGGATCTGAACTAAGCAATTATTCCTTGTCTGTGGATGAGGCA
AAACCAAGAGGTGAATTCCGTGATGGTCCAGGCAGTGGAAGAGGTGGTGG
CAGGAGTGGTGGAAGGAGTGGGGGATGGAGTGGGGGAAGGGATGGTGGTG
GCCGTGGTGGTCGTGGTGGTCGGCGTGGGGGTGGTCGATTTGGTGGTGCT
GGCAGAGGTCGTGGACCTAATAAGCCAAACCTTGCTGCTGCTGGCACGGG
AAGGAAGACAACTTTCAATGATGAGGATTAG
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protein sequence of Tc02v2_p013590.2

>Tc02v2_p013590.2 ID=Tc02v2_p013590.2|Name=Tc02v2_p013590.2|organism=Theobroma cacao|type=polypeptide|length=727bp
MGKSSKKSTPKVEAARDVAPLKSGKKGKREAEETPEKQVVVKRQKKNDGV
AQAIVKEKVEAKTQKKKKDETSSSSDDSSDSEDEPVPQKKQPAIVKNGSV
PAKKAKQASSSDSSESSSEEDSSSDEEATAQKKKPVVAKNSSVPAAKAVK
TESSDSSSDDDSDSDDEPAVKTKVSAAVKNGSAPVKKGKASSSSDSSDED
SSSDEDDEKSKPASKKGPTTVPKKGSSDSSESDSSSDEDTTQTKKLPFSL
NKFASSDSSSEEDSDEEDVKKATVVKQVSAPTPKKTEKSSSSSSDDSDSE
EEEENEAKGDKKPVTGKTAKKEESSKSSSDTDSSEDEAPLNKVPVASKRS
LPTAGAKQSKQESDDSDDDDSDDESEDEQPAAKKSKVASDSGKDAKVVKK
VSSDEEEGSEESSDEDEESDDEEETPKKKDTDGEMVDATTPQKITKQQDF
KSAKKAPQTPATPQGQPTGSKTLFVGNLPYQVEQADVKNFFKDAGEIVDI
RFATDAEGNFKGFGHVEFATAEAAQKALELNGEYLMNRSLRLDLARERGA
YTPYSGNGNNSFQKGGRSQTQTIFVKGFDQSLGEDEIRSSLEEHFGSCGE
ISRVAIPVDRETGGVKGYAYLDFNDGDSFNKALELDGSELSNYSLSVDEA
KPRGEFRDGPGSGRGGGRSGGRSGGWSGGRDGGGRGGRGGRRGGGRFGGA
GRGRGPNKPNLAAAGTGRKTTFNDED*
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