Tc02v2_t013590.1

Overview
NameTc02v2_t013590.1
Unique NameTc02v2_t013590.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2181
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productnucleolin 2, transcript variant X3
NoteNucleolin like 2 isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608509
GenbankXM_018115752.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013590Tc02v2_g013590Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013590.1Tc02v2_p013590.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto106401auto106401Theobroma cacaoexon
exon-auto106402auto106402Theobroma cacaoexon
exon-auto106403auto106403Theobroma cacaoexon
exon-auto106404auto106404Theobroma cacaoexon
exon-auto106405auto106405Theobroma cacaoexon
exon-auto106406auto106406Theobroma cacaoexon
exon-auto106407auto106407Theobroma cacaoexon
exon-auto106408auto106408Theobroma cacaoexon
exon-auto106409auto106409Theobroma cacaoexon
exon-auto106410auto106410Theobroma cacaoexon
exon-auto106411auto106411Theobroma cacaoexon
exon-auto106412auto106412Theobroma cacaoexon
exon-auto106413auto106413Theobroma cacaoexon
exon-auto106414auto106414Theobroma cacaoexon
exon-auto106415auto106415Theobroma cacaoexon
exon-auto106416auto106416Theobroma cacaoexon
exon-auto106417auto106417Theobroma cacaoexon
exon-auto106418auto106418Theobroma cacaoexon
exon-auto106419auto106419Theobroma cacaoexon
exon-auto106420auto106420Theobroma cacaoexon
exon-auto106421auto106421Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto106422auto106422Theobroma cacaoCDS
CDS-auto106423auto106423Theobroma cacaoCDS
CDS-auto106424auto106424Theobroma cacaoCDS
CDS-auto106425auto106425Theobroma cacaoCDS
CDS-auto106426auto106426Theobroma cacaoCDS
CDS-auto106427auto106427Theobroma cacaoCDS
CDS-auto106428auto106428Theobroma cacaoCDS
CDS-auto106429auto106429Theobroma cacaoCDS
CDS-auto106430auto106430Theobroma cacaoCDS
CDS-auto106431auto106431Theobroma cacaoCDS
CDS-auto106432auto106432Theobroma cacaoCDS
CDS-auto106433auto106433Theobroma cacaoCDS
CDS-auto106434auto106434Theobroma cacaoCDS
CDS-auto106435auto106435Theobroma cacaoCDS
CDS-auto106436auto106436Theobroma cacaoCDS
CDS-auto106437auto106437Theobroma cacaoCDS
CDS-auto106438auto106438Theobroma cacaoCDS
CDS-auto106439auto106439Theobroma cacaoCDS
CDS-auto106440auto106440Theobroma cacaoCDS
CDS-auto106441auto106441Theobroma cacaoCDS
CDS-auto106442auto106442Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013590.1 ID=Tc02v2_t013590.1|Name=Tc02v2_t013590.1|organism=Theobroma cacao|type=mRNA|length=2181bp
ATGGGAAAGTCAAGCAAGAAATCAACCCCCAAAGTTGAAGCAGCTCGTGA
TGTAGCTCCTCTTAAGTCTGGAAAGAAAGGCAAGAGAGAAGCTGAAGAAA
CTCCTGAAAAACAAGTGGTTGTGAAAAGACAGAAGAAAAACGATGGAGTA
GCACAGGCTATCGTAAAGGAGAAAGTTGAAGCAAAAACCCAGAAGAAGAA
GAAAGATGAAACCAGCAGTTCTTCGGATGACTCTTCTGATTCTGAGGATG
AACCTGTACCACAAAAGAAGCAGCCAGCTATTGTCAAGAATGGCTCTGTA
CCAGCAAAGAAAGCAAAACAAGCTAGCAGTTCAGATTCTTCTGAGTCTAG
TAGTGAGGAAGATTCATCCTCTGATGAAGAAGCAACTGCTCAGAAGAAAA
AACCAGTAGTTGCTAAAAATAGCTCTGTTCCAGCTGCTAAGGCAGTGAAA
ACCGAGAGTTCTGATTCATCTTCTGATGATGATTCTGATTCGGATGATCC
TGCTGTAAAAACAAAGGTATCAGCAGCCGTTAAAAATGGCTCTGCACCTG
TTAAGAAAGGAAAGGCCTCAAGCAGTTCAGATTCTTCAGATGAAGATAGT
AGCTCGGATGAAGATGATGAAAAATCAAAGCCTGCCTCTAAGAAAGGACC
TACCACTGTTCCCAAAAAGGGGTCAAGTGATAGTTCGGAAAGTGACAGCT
CTTCAGATGAGGACACCACCCAAACAAAGAAATTGCCATTTTCTCTTAAT
AAATTTGCATCTAGTGATAGCAGCTCTGAGGAGGATTCTGATGAAGAGGA
TGTAAAGAAAGCAACTGTGGTGAAGCAAGTGTCTGCTCCTACCCCAAAGA
AAACAGAGAAATCCAGTAGTAGCTCTTCTGATGATAGTGATTCTGAGGAA
GAAGAGCAGGAAAATGAAGCTAAAGGTGATAAGAAACCTGTTACTGGCAA
AACAGCTAAGAAAGAAGAGTCATCTAAAAGTTCATCAGACACTGATTCCT
CTGAGGATGAGGCTCCTTTGAACAAAGTTCCTGTTGCTTCAAAAAGATCT
CTCCCTACAGCTGGGGCAAAACAATCAAAACAGGAAAGTGATGATAGTGA
TGATGATGATAGTGATGATGAAAGTGAGGATGAACAACCTGCAGCCAAAA
AGTCAAAGGTTGCTTCAGATAGTGGAAAAGATGCTAAAGTTGTCAAAAAA
GTAAGCAGTGATGAAGAGGAGGGGTCTGAAGAATCATCTGATGAAGATGA
GGAAAGTGATGATGAAGAAGAAACACCAAAGAAAAAAGATACTGATGGTG
AAATGGTGGATGCTACAACCCCACAGAAAATTACCAAGCAGCAGGATTTT
AAGTCTGCTAAGAAAGCTCCCCAAACTCCTGCAACGCCTCAAGGTCAACC
TACAGGATCAAAGACCTTGTTTGTTGGAAACCTACCTTATCAAGTTGAAC
AAGCTGATGTAAAGAATTTCTTTAAAGATGCTGGTGAGATTGTGGATATA
CGTTTTGCTACTGATGCTGAAGGGAACTTTAAGGGATTTGGACATGTTGA
ATTTGCTACAGCAGAGGCTGCACAGAAGGCTTTGGAATTGAATGGTGAAT
ATTTGATGAATCGTTCTCTTAGACTTGATTTGGCCCGTGAAAGGGGTGCA
TACACACCGTACAGTGGCAATGGGAACAATTCATTCCAGAAAGGTGGAAG
AAGTCAGACTCAAACAATTTTTGTCAAGGGGTTTGATCAATCTCTTGGTG
AAGATGAGATTAGGAGTTCTTTGGAAGAGCACTTTGGTTCTTGTGGAGAG
ATTTCTAGGGTGGCCATTCCAGTAGATCGGGAGACTGGTGGTGTGAAAGG
TTATGCTTACTTGGATTTCAACGATGGTGATAGTTTCAACAAAGCTTTAG
AACTTGATGGATCTGAACTAAGCAATTATTCCTTGTCTGTGGATGAGGCA
AAACCAAGAGGTGAATTCCGTGATGGTCCAGGCAGTGGAAGAGGTGGTGG
CAGGAGTGGTGGAAGGAGTGGGGGATGGAGTGGGGGAAGGGATGGTGGTG
GCCGTGGTGGTCGTGGTGGTCGGCGTGGGGGTGGTCGATTTGGTGGTGCT
GGCAGAGGTCGTGGACCTAATAAGCCAAACCTTGCTGCTGCTGGCACGGG
AAGGAAGACAACTTTCAATGATGAGGATTAG
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protein sequence of Tc02v2_p013590.1

>Tc02v2_p013590.1 ID=Tc02v2_p013590.1|Name=Tc02v2_p013590.1|organism=Theobroma cacao|type=polypeptide|length=727bp
MGKSSKKSTPKVEAARDVAPLKSGKKGKREAEETPEKQVVVKRQKKNDGV
AQAIVKEKVEAKTQKKKKDETSSSSDDSSDSEDEPVPQKKQPAIVKNGSV
PAKKAKQASSSDSSESSSEEDSSSDEEATAQKKKPVVAKNSSVPAAKAVK
TESSDSSSDDDSDSDDPAVKTKVSAAVKNGSAPVKKGKASSSSDSSDEDS
SSDEDDEKSKPASKKGPTTVPKKGSSDSSESDSSSDEDTTQTKKLPFSLN
KFASSDSSSEEDSDEEDVKKATVVKQVSAPTPKKTEKSSSSSSDDSDSEE
EEQENEAKGDKKPVTGKTAKKEESSKSSSDTDSSEDEAPLNKVPVASKRS
LPTAGAKQSKQESDDSDDDDSDDESEDEQPAAKKSKVASDSGKDAKVVKK
VSSDEEEGSEESSDEDEESDDEEETPKKKDTDGEMVDATTPQKITKQQDF
KSAKKAPQTPATPQGQPTGSKTLFVGNLPYQVEQADVKNFFKDAGEIVDI
RFATDAEGNFKGFGHVEFATAEAAQKALELNGEYLMNRSLRLDLARERGA
YTPYSGNGNNSFQKGGRSQTQTIFVKGFDQSLGEDEIRSSLEEHFGSCGE
ISRVAIPVDRETGGVKGYAYLDFNDGDSFNKALELDGSELSNYSLSVDEA
KPRGEFRDGPGSGRGGGRSGGRSGGWSGGRDGGGRGGRGGRRGGGRFGGA
GRGRGPNKPNLAAAGTGRKTTFNDED*
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