Tc02v2_t012330.3

Overview
NameTc02v2_t012330.3
Unique NameTc02v2_t012330.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1083
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productexopolygalacturonase, transcript variant X3
NotePutative Exopolygalacturonase (Fragment)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608380
GenbankXM_018115354.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g012330Tc02v2_g012330Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p012330.3Tc02v2_p012330.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto103787auto103787Theobroma cacaoexon
exon-auto103788auto103788Theobroma cacaoexon
exon-auto103789auto103789Theobroma cacaoexon
exon-auto103790auto103790Theobroma cacaoexon
exon-auto103791auto103791Theobroma cacaoexon
exon-auto103792auto103792Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto103793auto103793Theobroma cacaoCDS
CDS-auto103794auto103794Theobroma cacaoCDS
CDS-auto103795auto103795Theobroma cacaoCDS
CDS-auto103796auto103796Theobroma cacaoCDS
CDS-auto103797auto103797Theobroma cacaoCDS
CDS-auto103798auto103798Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t012330.3 ID=Tc02v2_t012330.3|Name=Tc02v2_t012330.3|organism=Theobroma cacao|type=mRNA|length=1083bp
ATGACAGCAAATTGCCAGGCCTTCAGAGCAGCATGGAAGAAAGCATGTCA
GGCTACAGGTGAGGTAGACCTTGTGATTCCAAGAGGGACATACTTGGTTG
GCCCTGTCAAATTCGCAGGCCCCTGCACAAATGTGTCTAAAATAACAGTT
CGTGTGAAGGGTTATCTGAAGGCAACAACAAACTTGTCTCAATATGGATA
TAGTGCTGGTTGGGTTGAATTCAAATGGGTGGAGGGGCTAATTTTGACTG
GAGGAGGGACTTTTGATGGGCAGGGTGCCAAAGCATGGCCTTACAATAGG
TGCCCCACTGACTTTAACTGCAAACTTCTTCCAACTAATGTCAAATTTGT
GGGGACGAATAGGACGGTTGTAAGAAGCATAACTTCAGTAAATAGCAAGT
TCTTTCATATGGCTCTTGTCGAATGCAAGAACTTCAAGGGCAGTAAAATC
AAGATTTCAGCCCCAGCAGATAGCCCTAACACAGATGGGATCCATATCGA
ACGAAGCTCTAGCGTACACTTTTCACGATCACTTATAGGTACAGGTGATG
ACTGCATATCTATTGGACAAGGAAATTCTCAGGTCACCATCACAAGCATC
AGCTGCGGGCCAGGTCATGGCATCAGCGTTGGAAGTCTGGGAAGATATAG
GAATGAAGGTGATGTAAGTGGATTAGTGGTTAGAGACTGCACAATTACAG
GGACCACGAATGGGATTAGGATCAAGACATGGGCTAACTCTCCAGACAGA
AGTGCTGCCACCAATATGACATTCGAAAACATCAACATGAACAATGTGAC
CAATCCGATTATAATCGATCAGGCATATTGTCCATTCACATCTTGCACCC
CAATGGGAACATCTCAAGTGAAACTAAGTGACATATATTTCAAGAAAATA
AAGGGAACATCATCATCTGCAGTGGCGGTAACACTAGAATGTAGCAAAGG
GATCCCATGCCAGGATATTTACCTTGAAGATGTTCACTTGGACCTGGCAT
CAGGGGAGAAACAAGCGACTTCCACTTGTAAAAATGTCAGGGCTAAATAC
ATTGGCACCCAAATCCCACCACCATGTGCTTAG
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protein sequence of Tc02v2_p012330.3

>Tc02v2_p012330.3 ID=Tc02v2_p012330.3|Name=Tc02v2_p012330.3|organism=Theobroma cacao|type=polypeptide|length=361bp
MTANCQAFRAAWKKACQATGEVDLVIPRGTYLVGPVKFAGPCTNVSKITV
RVKGYLKATTNLSQYGYSAGWVEFKWVEGLILTGGGTFDGQGAKAWPYNR
CPTDFNCKLLPTNVKFVGTNRTVVRSITSVNSKFFHMALVECKNFKGSKI
KISAPADSPNTDGIHIERSSSVHFSRSLIGTGDDCISIGQGNSQVTITSI
SCGPGHGISVGSLGRYRNEGDVSGLVVRDCTITGTTNGIRIKTWANSPDR
SAATNMTFENINMNNVTNPIIIDQAYCPFTSCTPMGTSQVKLSDIYFKKI
KGTSSSAVAVTLECSKGIPCQDIYLEDVHLDLASGEKQATSTCKNVRAKY
IGTQIPPPCA*
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