Tc02v2_t005270.1

Overview
NameTc02v2_t005270.1
Unique NameTc02v2_t005270.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length5868
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productuncharacterized LOC18607606, transcript variant X2
NoteUncharacterized protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607606
GenbankXM_018115396.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g005270Tc02v2_g005270Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p005270.1Tc02v2_p005270.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto89750auto89750Theobroma cacaoexon
exon-auto89751auto89751Theobroma cacaoexon
exon-auto89752auto89752Theobroma cacaoexon
exon-auto89753auto89753Theobroma cacaoexon
exon-auto89754auto89754Theobroma cacaoexon
exon-auto89755auto89755Theobroma cacaoexon
exon-auto89756auto89756Theobroma cacaoexon
exon-auto89757auto89757Theobroma cacaoexon
exon-auto89758auto89758Theobroma cacaoexon
exon-auto89759auto89759Theobroma cacaoexon
exon-auto89760auto89760Theobroma cacaoexon
exon-auto89761auto89761Theobroma cacaoexon
exon-auto89762auto89762Theobroma cacaoexon
exon-auto89763auto89763Theobroma cacaoexon
exon-auto89764auto89764Theobroma cacaoexon
exon-auto89765auto89765Theobroma cacaoexon
exon-auto89766auto89766Theobroma cacaoexon
exon-auto89767auto89767Theobroma cacaoexon
exon-auto89768auto89768Theobroma cacaoexon
exon-auto89769auto89769Theobroma cacaoexon
exon-auto89770auto89770Theobroma cacaoexon
exon-auto89771auto89771Theobroma cacaoexon
exon-auto89772auto89772Theobroma cacaoexon
exon-auto89773auto89773Theobroma cacaoexon
exon-auto89774auto89774Theobroma cacaoexon
exon-auto89775auto89775Theobroma cacaoexon
exon-auto89776auto89776Theobroma cacaoexon
exon-auto89777auto89777Theobroma cacaoexon
exon-auto89778auto89778Theobroma cacaoexon
exon-auto89779auto89779Theobroma cacaoexon
exon-auto89780auto89780Theobroma cacaoexon
exon-auto89781auto89781Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto89782auto89782Theobroma cacaoCDS
CDS-auto89783auto89783Theobroma cacaoCDS
CDS-auto89784auto89784Theobroma cacaoCDS
CDS-auto89785auto89785Theobroma cacaoCDS
CDS-auto89786auto89786Theobroma cacaoCDS
CDS-auto89787auto89787Theobroma cacaoCDS
CDS-auto89788auto89788Theobroma cacaoCDS
CDS-auto89789auto89789Theobroma cacaoCDS
CDS-auto89790auto89790Theobroma cacaoCDS
CDS-auto89791auto89791Theobroma cacaoCDS
CDS-auto89792auto89792Theobroma cacaoCDS
CDS-auto89793auto89793Theobroma cacaoCDS
CDS-auto89794auto89794Theobroma cacaoCDS
CDS-auto89795auto89795Theobroma cacaoCDS
CDS-auto89796auto89796Theobroma cacaoCDS
CDS-auto89797auto89797Theobroma cacaoCDS
CDS-auto89798auto89798Theobroma cacaoCDS
CDS-auto89799auto89799Theobroma cacaoCDS
CDS-auto89800auto89800Theobroma cacaoCDS
CDS-auto89801auto89801Theobroma cacaoCDS
CDS-auto89802auto89802Theobroma cacaoCDS
CDS-auto89803auto89803Theobroma cacaoCDS
CDS-auto89804auto89804Theobroma cacaoCDS
CDS-auto89805auto89805Theobroma cacaoCDS
CDS-auto89806auto89806Theobroma cacaoCDS
CDS-auto89807auto89807Theobroma cacaoCDS
CDS-auto89808auto89808Theobroma cacaoCDS
CDS-auto89809auto89809Theobroma cacaoCDS
CDS-auto89810auto89810Theobroma cacaoCDS
CDS-auto89811auto89811Theobroma cacaoCDS
CDS-auto89812auto89812Theobroma cacaoCDS
CDS-auto89813auto89813Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t005270.1 ID=Tc02v2_t005270.1|Name=Tc02v2_t005270.1|organism=Theobroma cacao|type=mRNA|length=5868bp
ATGGCGACCACCACTAAATCCGTCGATCCTTCCCTTTGGTGGGAACCGTT
TTCTTCTCTTCTCACTGACCTCGAGAACGCCTCTCCCTCCGACGACCTCC
CTAAACCTCTGGCGAAGAAGTTGAAAGAAAATCACGATTGGTTCGTGGAG
ACGGTGACTAGGTTTAAACCGCCGAATGAGAAGTCGAAGGAAGCTTTGAA
TTCGCAGCAAATCAAAATTGGTCCGCATGAGCTGACTGTAAAGCCTGATT
TCAGAGACAAGGCTTTGCAAGTCAGCTCGTATTTGTGTTTGGATGAGGTG
CAGTCCTACATTCTTGTTGATAGGTATCTTGAGCAAGGAAATGCTGCTGA
GAATTATATAGTTCACGATTCTATTCATGTGGTATTGCTACAGTATTACA
TTGAGCGTCAGTGCTTGTTCAAATGCACCCGGCAGATTCTCATGCATGCT
TTATTTTTGGGAAATATCTTGAAAGAAGGGAGTTTTATTAGGGAGGAAGC
ACTAAAGCTGATTTCTGATGGACTGGAAAAAAAATTAATATCTGTCCTGG
AAGCCCTCATGTCCTGCAGTCATCCAGAGCAGATGGATGTTGATCTTTTC
ACCTTATGGGCTGAGGAGACATTACTTGAAGACAACTTGGTTTTGGACAT
TATTTTTCTCATTTATTATGAGTCACTTTGTACTTGTAGTGCTAAAAAAT
GGAAAAAGTTATGCTTGATCTATAAGGGAATCTTATCAGGGTCTTATAAT
TTTGGAAAGCTAGCAATATCACCTGAAGCACTGTATTCATTTTATCATGC
CAAAGTTCTGCTGCTACTTGTCCTCATAGAAACTCTGAACCTGGAAAATC
TTCTTCAAATGGTTCATGATGAAATTCCTTTCAGGCAGGGTGCTTCTGTT
TTTATGTTGAATGATGTCCAAGAGATTGATGCTCTCATATCAAGCTTTGA
TATCTTTGAAATGAGAGAAGCTGGTCCATTAGTTCTTGCATGGGCAGTAT
TTCTTTGTCTGATTTCATCTCTTCCTCAAAAGGAGGAAACTAATGAGATT
GATCATGTTGGGTATGTTCGCCAAGCTTTTGAAGCTTCATCTTTGGGTTA
TTTCCTTGAAATTCTTCAAAGTGACATATTGAAGGAATCAGATGGACCTG
TTGCTGGTTATCGAAGTGTCTTGAGAACTTTTATTTCTGCATTCATTGCA
TCTTATGAAATTAATCTTCAGTTGGAGGATGGTACCCTTAATTTGATATT
GGATATTCTTTGCTATGTTTATCGAGGAGAGGAGTCACTTTGTATTCAAT
TTTGGGATAGAGCAAGTTTTATAGATGGTCCTATTCGGTGTCTTCTTTGT
AACTTGGAGGGCGAATTTCCCTTTAGGACTGTGGAACTTCTACGCCTTTT
ATCATCTCTATGTGAAGGAAGCTGGCCTGCAGAATGTGTGTATAACTTTT
TAGATAAATCCACTGGCATATCGTCCTTGTTTGACATTACTAGTGAATCC
TTGTTGGATCGTACATCTCAAATTGTTGAAACTCAGCATCCAGTGTGTAT
TCCTGGGGTTGATGGTCTGCACATTCCTAGTAGAACTCGTGGGCACATTC
TGAAAGTTGTTGGTGGGAACACTGCTCTTGTGCGCTGGGAGCATAAAAAA
TCAGCTGTGTTTGTGCTGCTCCTTCGTTTGGCCCAGACACCACACTTAGA
AAACAATGAAGAAGCATTTCTTACCCTTGACCTACTTGGCCGAATGGTGT
CCTTCAACATGGCTGTATGTTTTTCTATGATGGATAGTTGCAACTTCTTG
CATGTCCAAGCAACTGGCATGAATGGGCAGATAGAAAATAATCTGTGGGT
TGTTGAGATCATTAGCATTATAGTCAGAAATTTGTCTCCTAGTCCCAGTG
GTGCTGCACTGATGTCCATGGCTTTTGTAATCATGGCAAAGATGCTGAAA
TGTTCCCCTTCTCAAGTTGCTGCAATAGCCTTGAAATCAAATATATTTGA
TGTGGCTTCAAATTCTAGCGTCTTCAACGTAGGTTGGAATGGTCTATCAA
GTGGGTCATGGTTGCTATCTGGAAAGTTGGCAAAGATGCTTTTAATTGAT
AGTGAGCAGAGTGATTATGACTGCCTATTAACAATATCAGTGCTGGATTT
CACCATGCAGCTTGTAAGGACTGGAGTAGAGGATGATATTGTTGTGTCAT
TAATTGTTTTCTCCCTCCAGTATATTCTAGTCAATCATGAGTACTGGAAA
TACAAGGTGAAGAATACTCGTTGGAAAGTAACATTGAAGGTGCTTGAAGT
GATGAAAACATGCATTTTAGCAACATCTTCCTCTGAAAAATTGGGTGGTG
TAATCTGGGATTTGCTGCTCTATGATTCTTCGATCCACAACACTCTCTTT
CGTATAATGTGTACAACTTCTGAAGCCTTGGAGAGGCTTTATCTCAACCG
TCTTATCGAACTGGTGGAGATTGAGGGATTACAACTCGCTATAAGTTCTG
CTTTGGATATTTCATATATCATGCTTACCAAATTTTCAAAGGATATGTCA
TCAAGCATTCCAGCTTTTCACCAAGCTATGCTCTCTTCAATGACCAAGCC
AATTCCTGTTGTTGCTGCTGTCATATCATTGATATCTTTTTTTAATGATC
CGGCAATACAGGTTGGTGCTGCTAAACTACTATCAGTTTTGTTGCGGATG
GCAGAACCATATCCTTTTGTGAATTCATGCTTTGGTCCAGATGATAAGCT
GATGACAGATTTAAGGCATTCTATTAATAGCATTTTACTTGAACATGGGG
TACTGAATGAAGATCTTTTTATTGCTGTACTGAATTTGCTTACTTCTGCA
GCTTGTTACCAGCCTGCCTTTTTTGTTGCTATTTTTGACACAAAAGAGGA
TACAGATGTTCAACTGGCTACTGCTGGTGGTTTGAAACAGTCAACAAATG
AAGCTTTGTCTGATTCACTGGGCTCCAAAATATCTAGTGTTGTAGATGCC
CTTCTTCAATATGTTGTAAGATCCGACGATGCTGTCAATAGCAATCCCTG
CATACCGCTGAACATACTTAACTTGCTGAAGTCATTGTGGCATGGGGCTG
GTCTGTATACAATGATTTTGGAGAGGCTGAAAAGCTCTGACAAGTTCTGG
AAACAATTGTCAAACTCTATCTCTCGAACTGCTGGCTCAGAAGTTCCTTT
AAGTATGAAAGAATCAGAGGCTTTACACCTGGGATACAGATATCAATGTC
AATCAGCTATATTGGAAACAATGGCATATGATATGTTTTTGATGAAAAAG
TTGTTATATGCTGAATCACTCATTAAAGAACCACCTGAATCAAATAAGAA
AATAGAAGCTGATAATTATGCTCTGAAGGATATTATTTCAAATTGGTGCA
AGAGCTCTGTTCTTGGACGCATGATCAAATCATATACATCTTGTAAATAT
GACAATGATACATATTTTCGTGCAAAGGTCGCATTAAGTTTACTCACTGT
GCACATAATGGGGAAATTAGCAGCTGGTGATGCTGGAAGTTTGTCTGTAT
CTTTGGTCGAGAAGATTCGGCTTCTGTTTAAAAAGTTGACCATTCAGCCT
GCTTTTTCTGAATTGCTGGCGCAATACTCACAGCGTGGTTACAGTGAAGG
GAAGGAATTGAAAGCTTTAATAATCAGCGATCTTTATTATCATCTGCATG
GAGAGCTTGAAGGCCGTAAAATGAGTCCTGGACCCTTTAAAGAACTCTTC
CAGTTTCTGATTGAATCAAAAGTGGTGAAGATTTATGAGAATAAGTGCAG
GGTTGACCCTTTTTCTACTGCTGATGATGTCTATGTGTTTGATCTTCAAC
GCATAGAAGCAGATTTGGGGTTAGATATGTGGGATTATTCTGAATGGAAA
ACATCTAAAACAATTGCAGACACAATGCTGTGCTACATGCAGGGAGCAAA
CTCAATGGTGTTGATTGGAAATTCCAAGCTTTCTTCACTGAAAGCATTAA
TTACTGTCTTAACTGTGTACGATGACAGTTCGCTGGAAAAAATGGTGAGG
GTTGGAGGGAAGATTCCCAATCAACTAATTTTGCCATGCATTGATCACAT
ATGCCAAAGTTTCCATGACACTTTAGAATTTTTAACTCCAGTCCCTGATG
TCTCTCAAGGTGTCTTTGATTTCCTCACTGCACAAGCAGACTTACTTCTT
CATCTCATGAGATCTGTGCAGAATAGCCTGTCATCATCTGCTTGTGTTCT
TGTCTTAAAAACTTCTGGTACTGGTCTTAAAGTGCTAAGTGACCTCAGAA
CAATGGTTAGTGGGGTGAATAAAACAATGAAGCTTTTGCTAATGTTGATT
CTGTCAGCAGTGGAGTTTTACCGGCTTGATTCCAGCATAACTGGTGTGAA
AGATAAAGAGTCTGCTGAAGGGTTTGCTGAGATTTCAAACGTCAGCCTTG
GACTGTTACCCATCTTGTGCAACTGTATTACTATTTCTGAGTGTTTTTCC
CTCTCCCTGACTGCTTTGGACTTGGCACTAAAATGTTTTTTGACACCTGA
TACGTGGTTTCCCATCATACATAAACATCTCCAATTACAACATGTTGTTC
TGAAACTTCAAGATAAGAATTCTTTTGGATCTATTCCTATTTTATTGAAG
TTCTTCTTGGCCATTGCACATGTAAGAGGAGGTGCTGAAATGCTTCTTAA
TGCTGGTTTTTTCTCATCTCTTAAAGTTTTATATGCTGACATGTCAGATG
GTCGAGTTTCTTCAGTTATTAATTCTGGCAAAAGCCTCTCCATCTTATCG
GACAAGACTGAGAAGCCTCAGCACATCTGGGGACTTGGCTTAGCTGTGGT
CACAGCTATTGTTCATTCTTTAGGAGCCAGTTCTTCATGTATTGACATTG
CGGAAAATGTGATACCATACTTCTTTTCAGAGAAAGCCCATCTAATTTCT
TATTTTCTCAGTGCACCAGAATTTCCATCTGATGATCATGACAAGAAAAG
GCCACGTGCACAAAGGACTTGGACTTCTCTTTCTTCTTTGAAGGAGACTG
AGCAAACTCTCATGCTAATGTGTGTCCTGGCAAGACATTGGAAATCATGG
GTTAAGGCTATGAAAAATATGGATTCACAATTAAGGGAGATGAGTATTCA
TTTGTTGGCCTTCATTAGCCGTGGAAATCAACGCCTTGGAGAGGCTTCAA
GCCGGACCGCTCCCCTCTTATGCCCTCCTATCCTCAAGGATGAGTTTGAT
TGCTGCAAAAAACCTTCATTTGTCAACAGCAGAAATGGATGGTTTGCTCT
TTCACCCCTTGGCTGCGTCTCAAAGCCCAAGTTCTCTGGCATATTAACTA
CAACTGCTATTGTGATCAAAGATCAAGGAACTGAAAGCAACAACCATGTT
CCACAAACATACTTTTCAGACTTAGTTGCCATTGAGATGTACAGAATTAC
ATTTCTTTTATTGAAATTTCTCTGTTTACAAGCTGAGGGTGCTGCTAAAA
GGGCAGAGGAGTTGGGATATGTTGACCTCGCTCATTTTCCTGAACTTCCA
ATGCCTGAGATTTTACATGGGATACAGGACCAAGCAATTGCTATTGTCAC
GGAATTATGCGAGACTAATAAACTGAAGCAGATTCATTATGAGTTACAGC
GTGTCTGTCTGCTACTGCTTCAAATAATGGAGATGGCCTTGTACTTGGAG
CTTTGTGTCTTACAAATTTGTGGAATTAGACCTGTTCTAGGTCGCGTGGA
GGACTTGTCGAAGGAGCTCAAATTTTTGATTAAAGCTACGGAGGGGCATG
CTTTTCTCAAAGGATCAATGAAGTCCCTCAATCAGATAATATCACTTGTC
TATCCTGGTTTGCCATAA
back to top

protein sequence of Tc02v2_p005270.1

>Tc02v2_p005270.1 ID=Tc02v2_p005270.1|Name=Tc02v2_p005270.1|organism=Theobroma cacao|type=polypeptide|length=1956bp
MATTTKSVDPSLWWEPFSSLLTDLENASPSDDLPKPLAKKLKENHDWFVE
TVTRFKPPNEKSKEALNSQQIKIGPHELTVKPDFRDKALQVSSYLCLDEV
QSYILVDRYLEQGNAAENYIVHDSIHVVLLQYYIERQCLFKCTRQILMHA
LFLGNILKEGSFIREEALKLISDGLEKKLISVLEALMSCSHPEQMDVDLF
TLWAEETLLEDNLVLDIIFLIYYESLCTCSAKKWKKLCLIYKGILSGSYN
FGKLAISPEALYSFYHAKVLLLLVLIETLNLENLLQMVHDEIPFRQGASV
FMLNDVQEIDALISSFDIFEMREAGPLVLAWAVFLCLISSLPQKEETNEI
DHVGYVRQAFEASSLGYFLEILQSDILKESDGPVAGYRSVLRTFISAFIA
SYEINLQLEDGTLNLILDILCYVYRGEESLCIQFWDRASFIDGPIRCLLC
NLEGEFPFRTVELLRLLSSLCEGSWPAECVYNFLDKSTGISSLFDITSES
LLDRTSQIVETQHPVCIPGVDGLHIPSRTRGHILKVVGGNTALVRWEHKK
SAVFVLLLRLAQTPHLENNEEAFLTLDLLGRMVSFNMAVCFSMMDSCNFL
HVQATGMNGQIENNLWVVEIISIIVRNLSPSPSGAALMSMAFVIMAKMLK
CSPSQVAAIALKSNIFDVASNSSVFNVGWNGLSSGSWLLSGKLAKMLLID
SEQSDYDCLLTISVLDFTMQLVRTGVEDDIVVSLIVFSLQYILVNHEYWK
YKVKNTRWKVTLKVLEVMKTCILATSSSEKLGGVIWDLLLYDSSIHNTLF
RIMCTTSEALERLYLNRLIELVEIEGLQLAISSALDISYIMLTKFSKDMS
SSIPAFHQAMLSSMTKPIPVVAAVISLISFFNDPAIQVGAAKLLSVLLRM
AEPYPFVNSCFGPDDKLMTDLRHSINSILLEHGVLNEDLFIAVLNLLTSA
ACYQPAFFVAIFDTKEDTDVQLATAGGLKQSTNEALSDSLGSKISSVVDA
LLQYVVRSDDAVNSNPCIPLNILNLLKSLWHGAGLYTMILERLKSSDKFW
KQLSNSISRTAGSEVPLSMKESEALHLGYRYQCQSAILETMAYDMFLMKK
LLYAESLIKEPPESNKKIEADNYALKDIISNWCKSSVLGRMIKSYTSCKY
DNDTYFRAKVALSLLTVHIMGKLAAGDAGSLSVSLVEKIRLLFKKLTIQP
AFSELLAQYSQRGYSEGKELKALIISDLYYHLHGELEGRKMSPGPFKELF
QFLIESKVVKIYENKCRVDPFSTADDVYVFDLQRIEADLGLDMWDYSEWK
TSKTIADTMLCYMQGANSMVLIGNSKLSSLKALITVLTVYDDSSLEKMVR
VGGKIPNQLILPCIDHICQSFHDTLEFLTPVPDVSQGVFDFLTAQADLLL
HLMRSVQNSLSSSACVLVLKTSGTGLKVLSDLRTMVSGVNKTMKLLLMLI
LSAVEFYRLDSSITGVKDKESAEGFAEISNVSLGLLPILCNCITISECFS
LSLTALDLALKCFLTPDTWFPIIHKHLQLQHVVLKLQDKNSFGSIPILLK
FFLAIAHVRGGAEMLLNAGFFSSLKVLYADMSDGRVSSVINSGKSLSILS
DKTEKPQHIWGLGLAVVTAIVHSLGASSSCIDIAENVIPYFFSEKAHLIS
YFLSAPEFPSDDHDKKRPRAQRTWTSLSSLKETEQTLMLMCVLARHWKSW
VKAMKNMDSQLREMSIHLLAFISRGNQRLGEASSRTAPLLCPPILKDEFD
CCKKPSFVNSRNGWFALSPLGCVSKPKFSGILTTTAIVIKDQGTESNNHV
PQTYFSDLVAIEMYRITFLLLKFLCLQAEGAAKRAEELGYVDLAHFPELP
MPEILHGIQDQAIAIVTELCETNKLKQIHYELQRVCLLLLQIMEMALYLE
LCVLQICGIRPVLGRVEDLSKELKFLIKATEGHAFLKGSMKSLNQIISLV
YPGLP*
back to top