Tc02v2_t005200.1

Overview
NameTc02v2_t005200.1
Unique NameTc02v2_t005200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1425
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 72% coverage of the annotated genomic feature by RNAseq alignments
Productputative amidase C869.01
NotePutative Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID108660994
GenbankXM_018116544.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g005200Tc02v2_g005200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p005200.1Tc02v2_p005200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto89643auto89643Theobroma cacaoexon
exon-auto89644auto89644Theobroma cacaoexon
exon-auto89645auto89645Theobroma cacaoexon
exon-auto89646auto89646Theobroma cacaoexon
exon-auto89647auto89647Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto89648auto89648Theobroma cacaoCDS
CDS-auto89649auto89649Theobroma cacaoCDS
CDS-auto89650auto89650Theobroma cacaoCDS
CDS-auto89651auto89651Theobroma cacaoCDS
CDS-auto89652auto89652Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t005200.1 ID=Tc02v2_t005200.1|Name=Tc02v2_t005200.1|organism=Theobroma cacao|type=mRNA|length=1425bp
ATGGCCGCCAATTCTTCTCTAAGGAGCTCTTCCGTCTTATTCCTCATCAT
TCTGATTCTTTCACCAATATCATCATCCGGGTTTTCCACCAGTACAACGA
CACACTACTCATTCTCAATCAAAGAAGCGACAATAAAAGATATAAAACTA
GCTGTCCAGAGAAACGAACTCACCTCAAGGCAACTTGTTGAGTTCTATCT
CGGAGAAATCGTCAGGCTCAATGTGCTCCTTAAAGGGATCATAGAAGTGA
ACCCTGATGCTTTGTATCAAGCTGATACTGCAGACAAAGAGCGGAAGTAC
TATAATGGTTTACTGCCTGACTTGCACGGTATTCCCATTCTGCTCAAGGA
TAACATTGGTACTAATGATAAGCTGAACACCACGGCCGGTTCCTTTGCAT
TGCTTGGCTCAGTCGTGCCAAGGGATGCGGGGGTAGTGATGAAATTGAGA
AAAGCTGGAGCAATCATTCTGGGTAAAGCTAGCTTGAGTGAGTGGTCTAT
GTTTAGGTCGTTGACTGCACCCGCTGGCTTTAGTCCAAGAGGTGGGCAGG
TAGTGGGCCTCAAACCTACAGCTGGTCTCACCAGCCGAGCTGGGGTCATT
CCAATTACTCCAAGACAGGACACCATTGGGCCTATCTGCAGGACAGTGTC
GGATGCTGTTTATGTTCTTGATGCCATTGTAGGCTTCGACTCGAATGACC
ATGCAACTAGATATGCTTCAGCTTACATTCCTCCTGGTGGCTATAAACAA
TTCCTTAATAGCTATGGGCTCAAAGGAAAGAGATTGGGCATAGTGAGAAA
TCCATTTTTCAAAATTGTTGAAGGATTAGGTTTTGGTCAGACTTTTGAGA
CCCATTTACAAACACTAAGGGGAGAAGGTGCTGTTTTGGTAGACAATTTG
CAAATAGCCAACATCGATGTTATACTGAATTTCAACTTAAGTGGAGAAGC
ATTGGCGACCTTAGCTGAGTTCAAATTGTCCTTGAATGCCTACCTTCAAG
AGTTGGTGGCTTCCCCAGTGCGATCCTTGGCAGATATCATTGCCTTCAAC
CTGAAATTCCCCAATTTGGAACTGACAGATAAAATAGGCCAAGATATCTT
TCTGGCAGCCCAGGCCACAAATGGGATTGGCGCTCAAGAGAGGGCAGCAT
TGTCAAACTTGGAAAATCTGTCGAGAAATGGATTCGAGAAGTTGATGAAA
GACTACAAGCTGGATGCATTGGCGACTCCTAGGTCAGATGCTTCTCCTAT
GTATGCAATTGGAGGGTTCCCAGCAATTATTGTGCCTGCAGGATATGATA
GCCAGGGGGTTCCTATTGGCCTTTCCTTTGGGGGACTGAAGGGCTCGGAG
CCGAAGCTAATTGAAATCGCATATGGCTTTGAGCAAGCTACCAAGATTAG
GAAGCCTCCTTCATTCAAACCTTGA
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protein sequence of Tc02v2_p005200.1

>Tc02v2_p005200.1 ID=Tc02v2_p005200.1|Name=Tc02v2_p005200.1|organism=Theobroma cacao|type=polypeptide|length=475bp
MAANSSLRSSSVLFLIILILSPISSSGFSTSTTTHYSFSIKEATIKDIKL
AVQRNELTSRQLVEFYLGEIVRLNVLLKGIIEVNPDALYQADTADKERKY
YNGLLPDLHGIPILLKDNIGTNDKLNTTAGSFALLGSVVPRDAGVVMKLR
KAGAIILGKASLSEWSMFRSLTAPAGFSPRGGQVVGLKPTAGLTSRAGVI
PITPRQDTIGPICRTVSDAVYVLDAIVGFDSNDHATRYASAYIPPGGYKQ
FLNSYGLKGKRLGIVRNPFFKIVEGLGFGQTFETHLQTLRGEGAVLVDNL
QIANIDVILNFNLSGEALATLAEFKLSLNAYLQELVASPVRSLADIIAFN
LKFPNLELTDKIGQDIFLAAQATNGIGAQERAALSNLENLSRNGFEKLMK
DYKLDALATPRSDASPMYAIGGFPAIIVPAGYDSQGVPIGLSFGGLKGSE
PKLIEIAYGFEQATKIRKPPSFKP*
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