Tc02v2_t004980.1

Overview
NameTc02v2_t004980.1
Unique NameTc02v2_t004980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1479
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 57 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productauxin transporter-like protein 5
NoteAuxin transporter-like protein 5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607576
GenbankXM_007041827.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g004980Tc02v2_g004980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p004980.1Tc02v2_p004980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto89485auto89485Theobroma cacaoexon
exon-auto89486auto89486Theobroma cacaoexon
exon-auto89487auto89487Theobroma cacaoexon
exon-auto89488auto89488Theobroma cacaoexon
exon-auto89489auto89489Theobroma cacaoexon
exon-auto89490auto89490Theobroma cacaoexon
exon-auto89491auto89491Theobroma cacaoexon
exon-auto89492auto89492Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto89493auto89493Theobroma cacaoCDS
CDS-auto89494auto89494Theobroma cacaoCDS
CDS-auto89495auto89495Theobroma cacaoCDS
CDS-auto89496auto89496Theobroma cacaoCDS
CDS-auto89497auto89497Theobroma cacaoCDS
CDS-auto89498auto89498Theobroma cacaoCDS
CDS-auto89499auto89499Theobroma cacaoCDS
CDS-auto89500auto89500Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t004980.1 ID=Tc02v2_t004980.1|Name=Tc02v2_t004980.1|organism=Theobroma cacao|type=mRNA|length=1479bp
ATGGCAACTGATAAGGTGGTGGAGACTGTGATTGTTGGGAATTATGTGGA
GATGGAAACTGAAGGGAAGCCTAAGGGTATGAAAAGCAGGATTTCTAAGA
TCTTTTGGCATGGTGGTTCTGTTTATGATGCCTGGTTTAGCTGTGCATCT
AATCAGGTGGCTCAAGTGTTGCTTACATTGCCATACTCATTTTCCCAGCT
GGGGATGCTCTCTGGCATTCTCTTTCAGCTGTTCTATGGGTTGCTGGGTA
GCTGGACAGCTTATCTCATTAGCATACTCTATGTAGAATATAGAACAAGA
AAAGAAAGAGAAAAAGTTGATTTCAGGAACCATGTCATTCAGTGGTTTGA
GGTTCTTGATGGACTCCTTGGAAAACACTGGAGGAACGTGGGTTTGGCAT
TTAACTGCACTTTTCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGT
GCAAGCAACATATATTACATAAATGATAATCTGGACAAGCGGACTTGGAC
TTACATCTTTGGGGCTTGTTGTGCCACCACAGTCTTTATTCCTTCATTCC
ACAATTACAGAATCTGGTCCTTTCTTGGCCTTGTCATGACCACCTACACT
GCATGGTATCTCACCATTGCCTCCCTCCTCCATGGCCAGGTAGAGGGAGT
CCGGCATTCTGGTCCGACCAAGCTGGTGCTATACTTCACCGGGGCCACAA
ACATTCTCTACACATTTGGGGGACATGCTGTTACTGTGGAGATCATGCAC
GCAATGTGGAAGCCTCAGAAGTTCAAGGCTATATACCTGCTAGCCACACT
GTATGTGCTGACACTGACACTTCCCTCGGCTGCTGCTGTTTATTGGGCAT
TTGGAGACATGCTTCTCAATCACTCAAATGCTTTTTCTCTTCTCCCAAGA
ACTCCCTTCAGAGACATGGCTGTCATTTTAATGCTTATCCACCAGTTCAT
AACATTTGGGTTTGCAAGCACGCCACTGTATTTTGTATGGGAGAAAGCAA
TCGGGATGCATGAGTGCAAGAGCCTGTGCAAGAGAGCAGCAGCAAGATTG
CCAGTGGTCATTCCCATTTGGTTCTTGGCCATCATTTTCCCATTCTTTGG
ACCCATCAACTCTACCGTAGGATCCCTCCTCGTTAGCTTCACTGTCTACA
TCATTCCTGCACTGGCGCACATCTTCACCTTCAGATCAGCCACTGCCCGA
GAGAATGCAGTGGAGCAACCACCGAAGTACTTCGGAAGATGGGTGGGGAC
GTACGTGATCAACATCTTTGTAGTGGTTTGGGTGCTGATTGTTGGGTTTG
GATTCGGTGGTTGGGCGAGCATGACAAATTTCATTCACCAGATTGACACA
TTCGGGCTCTTCACAAAATGTTACCAATGCCCACCGCCAGCAATGCCAGC
TTCACCACCACCTCACGGCCTCAACGCCACCGCGGCTGCTCCTCTACACC
ACCCTTTCAACCACACTCGCAGCCCTTGA
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protein sequence of Tc02v2_p004980.1

>Tc02v2_p004980.1 ID=Tc02v2_p004980.1|Name=Tc02v2_p004980.1|organism=Theobroma cacao|type=polypeptide|length=493bp
MATDKVVETVIVGNYVEMETEGKPKGMKSRISKIFWHGGSVYDAWFSCAS
NQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTR
KEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIAC
ASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYT
AWYLTIASLLHGQVEGVRHSGPTKLVLYFTGATNILYTFGGHAVTVEIMH
AMWKPQKFKAIYLLATLYVLTLTLPSAAAVYWAFGDMLLNHSNAFSLLPR
TPFRDMAVILMLIHQFITFGFASTPLYFVWEKAIGMHECKSLCKRAAARL
PVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFRSATAR
ENAVEQPPKYFGRWVGTYVINIFVVVWVLIVGFGFGGWASMTNFIHQIDT
FGLFTKCYQCPPPAMPASPPPHGLNATAAAPLHHPFNHTRSP*
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