Tc02v2_t003220.3

Overview
NameTc02v2_t003220.3
Unique NameTc02v2_t003220.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length6618
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productseparase, transcript variant X1
NotePutative Separase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607368
GenbankXM_018115691.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g003220Tc02v2_g003220Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p003220.3Tc02v2_p003220.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto85926auto85926Theobroma cacaoexon
exon-auto85927auto85927Theobroma cacaoexon
exon-auto85928auto85928Theobroma cacaoexon
exon-auto85929auto85929Theobroma cacaoexon
exon-auto85930auto85930Theobroma cacaoexon
exon-auto85931auto85931Theobroma cacaoexon
exon-auto85932auto85932Theobroma cacaoexon
exon-auto85933auto85933Theobroma cacaoexon
exon-auto85934auto85934Theobroma cacaoexon
exon-auto85935auto85935Theobroma cacaoexon
exon-auto85936auto85936Theobroma cacaoexon
exon-auto85937auto85937Theobroma cacaoexon
exon-auto85938auto85938Theobroma cacaoexon
exon-auto85939auto85939Theobroma cacaoexon
exon-auto85940auto85940Theobroma cacaoexon
exon-auto85941auto85941Theobroma cacaoexon
exon-auto85942auto85942Theobroma cacaoexon
exon-auto85943auto85943Theobroma cacaoexon
exon-auto85944auto85944Theobroma cacaoexon
exon-auto85945auto85945Theobroma cacaoexon
exon-auto85946auto85946Theobroma cacaoexon
exon-auto85947auto85947Theobroma cacaoexon
exon-auto85948auto85948Theobroma cacaoexon
exon-auto85949auto85949Theobroma cacaoexon
exon-auto85950auto85950Theobroma cacaoexon
exon-auto85951auto85951Theobroma cacaoexon
exon-auto85952auto85952Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto85953auto85953Theobroma cacaoCDS
CDS-auto85954auto85954Theobroma cacaoCDS
CDS-auto85955auto85955Theobroma cacaoCDS
CDS-auto85956auto85956Theobroma cacaoCDS
CDS-auto85957auto85957Theobroma cacaoCDS
CDS-auto85958auto85958Theobroma cacaoCDS
CDS-auto85959auto85959Theobroma cacaoCDS
CDS-auto85960auto85960Theobroma cacaoCDS
CDS-auto85961auto85961Theobroma cacaoCDS
CDS-auto85962auto85962Theobroma cacaoCDS
CDS-auto85963auto85963Theobroma cacaoCDS
CDS-auto85964auto85964Theobroma cacaoCDS
CDS-auto85965auto85965Theobroma cacaoCDS
CDS-auto85966auto85966Theobroma cacaoCDS
CDS-auto85967auto85967Theobroma cacaoCDS
CDS-auto85968auto85968Theobroma cacaoCDS
CDS-auto85969auto85969Theobroma cacaoCDS
CDS-auto85970auto85970Theobroma cacaoCDS
CDS-auto85971auto85971Theobroma cacaoCDS
CDS-auto85972auto85972Theobroma cacaoCDS
CDS-auto85973auto85973Theobroma cacaoCDS
CDS-auto85974auto85974Theobroma cacaoCDS
CDS-auto85975auto85975Theobroma cacaoCDS
CDS-auto85976auto85976Theobroma cacaoCDS
CDS-auto85977auto85977Theobroma cacaoCDS
CDS-auto85978auto85978Theobroma cacaoCDS
CDS-auto85979auto85979Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t003220.3 ID=Tc02v2_t003220.3|Name=Tc02v2_t003220.3|organism=Theobroma cacao|type=mRNA|length=6618bp
ATGCCTCCTCCAACCGAATCCTCTCTCCTCTCCGACCTTCAAACCTCCGA
TGACTCCCAACGCCTCCATTCTATCGTCTCCGACTACCTCCGCCCCGTCT
CCACCCTCGCAAATTCCAAGAAAACCTCCAAGAAAGCCGACCAAACCACC
GTCCGATCCCTCGCCAAGCAGTTCTTGTCCTTCCTTTCCAAATCTTTCCC
AATCATCTACAACCGTCTCTACATACAGAACCCTAGCCAACAACAACGAG
ACATTCTTTCTCCTTTTTATGATACTTACCGACAATGCTTAACTTGTCTC
GATTTCATCTCTTCGCAGTTAGCCGGCGGTCCCCACATGGTTCAGATCCA
GCGGTTGAAACTCGTTTACTGTTTACAAGCCTGGGGTCGATACGAAGAGG
GAGAGAGTGAGTCGTTTAGGGTTTTGGAGAGGCTTAGAGGAGAAGCCGAT
TCAGAAGGGAAATTCGTGCCGAGTATAGATGTTGGTGGCGGTGATTCGAA
GTTTGGATCTGTTGTAGTAGAGGCGGTGGCTTCCGTTGTGAAAAATGTGG
CTATGGGACAGAGTAAAGATTGTGGGAAATATGAAAGAGTTCTTGCTTTG
TTGGAGGAAGTTAGGCCTTGGTGCAGCCTTTTCAGGGAATTAGAATCCGT
TGCCATTGAGAAATCGCACAATGTGCTCGTTACCTTTCTGGGTAGATGCT
GTCGGTTTTTAGTTGAAGAGATGAATCATTTTGGCGAGGATTTGATTCGC
CGGTTCTACGTAGAATGTTTGGCTGAGTATTCAAGGTCGACAACGAAAGA
TCAAGTTTATAAGTTTGCCCGCAGAATATGTTCCTCTTTGTTCTCGCTAG
AGGGGAGCGAGAGCTCAGTTCGTATTGACTTAGTAACGTTTGTGTTGGCC
TCCATTTCCCGTGAATGCAAGGTTGAAATGGATAATGGTGCAATAGAGTT
TGTTGAACTTGCTGATTATTGTGCCAATAAGTGTCGAGCTGCCGGTACAA
TTTTTTGTAGTACTCTTGCAAGAAATTTAAACAACATGGCCGGTGATTTT
CATCAGGCTACAACCCCTGTTGATCTGATACTGAGGCTTTATGCAACTGG
GCTTGAATTCACTGATGATTTCACCACCTCCAAAGGTGCAGAAGACAATT
CTGCTATTGAAGTTTTGTTTATTGAAAGGGATAAGCTGCACAATTTGTCT
GCTTTACTTGGTTCGCTCAGACATTACTTTAACATTGGTGAAAAAGAGAC
TTGCATTTCATCTGATATTGAATATAAGAATTCTGTTAATCAAATGCATT
TGCAACCTGGGTCCAAGGGTCAGTGTTCTATGACTTGCAAGGACAGAAAG
GCTTGTATAGTAATGTACTATAATACACAGAAATTCTTGTGTCAGCCACT
TGCTGAACTAGTGAATTCAGAGAAAAAGCGCATACTTGCTGAAATCGAAG
CTTTAACAGATTCTAGCAAGCTTTACACTATCCAGGACGCATTTTATCAG
TTCTGTGATAGTTTCTTTTCTCTTAAACGCTGTACATCTGAATCAGAGAG
AGAAGAATTTGATGATGATGAAGTGTTGGTAGCTAGTGTGATTGCAGCTG
GGTTCATTCTTTCCATTGGCACAAAGCTTAAAATGCAGAAGAGTGTGTGT
TTAATCAAGCAAATCATTGGCAGTGGATGGATTCAATCTCAGGGACTTAA
ATATCTCTTTGTCTCTCTGCATAATATTGGTGTACTTATGTACAGAAGTA
AGCAAATGAAAGAGGCTTTGAAGGCTTTAAAACTGTCTTATAGAGCATCA
TGGACGAATATTCAACGTCTCTGTGAGATGTTTACTCATAAGAAGGGTTT
TGATGATAATCTGTCAGAAGATGCTATTAGAGGTTTGATAACTGACGCAT
GCACTAGAAGTGCTTTTCTTTTGGAAGTTCTCCATGTATGCGGCAATCTT
AAGGTGAAAAGAATTATTGTGGAGAGCCTTGAGAACTGGTCTTTGGCTGA
AAATTTGTTCAGACAGTTGCCAGGTCCTATTCCTTTGATAAAACAATGGG
TTAAGATTCAGTGTAAACTTCATAAAAATGTGGATGTAGAGGATAGTGCT
CCAACCTTATGTTGTATGCTGTTGTCTTCTACAAAAGTGTCAAAGAGGAC
AATTGGCATAATTTTAGAGCAGGAGCTTCTTGCATATCAGGAATTGAATC
ATGGGTACCCAGATTTTTGTCAGAGAATGCAAAATAAAGTTATTGATTTG
CTTATGCAAGATGTTTATGCCACAGAAAATAGTCCCTTATGGAAAGCAAG
AATTTTAATTAGAAAGGGAAGAGCACTAAGGATTAATGGGATTGAAGCTT
TGAAGAACTGTATTTTGTGCTTGTCTGAAGCTATATCTATTATGAAAAAC
TTCTATGGTGAAACACCTATCCTGGGAACTACAGCCTGCCATCAATTAGC
TGCTGCTTATTGCTTACGTGCACTATGTACCCAGGAAGCTGAACCAAACT
CGGAGCAAGTTTATCAAGATATCTGTGCTGCCTTAGATATGTGGTTGAGC
ATATTCGTTCCTGATTCTTGCTCCATGGATGATGAGTTCAAAATGGTGTC
TGGAAACACACTGCCACTGCTATATAATATACTTGATTTGCTATCAGTGA
AGGGTTGGACAAAATTGCACAGTAACATACATCAACTGATAATTAGATTA
TACAAGCAGAACAATATGCAAATTGGGAAATGCCTTGCAAACCTTTGGGA
ATGTAGGAGGCTTAGTCATGCACTTTGTGTTTCTCCAGTAAATGAGGCAT
TTATTGCAACCTTATCAGAGCATTGTGGTGAAACTTCCAAATCCATTGAT
TTCTGGATAGGTTGTCTAAGTGGGTCCCAACCTGGACTTCTTGGATTCCA
ACAGAACCTCATATGTTTCTTTAACACTTTCACCCATCGCTTTAAAACTC
ATGAAAGAGATTTCAAGTCAGCTGTCCCAGTTAACAATGTAAAACAGATT
GTCTCTGAACTCATTTCTAGTGATCCTGTACGCAGTCATTCTCTCTTCCT
TGCGGGGTACCTCTACTATGATTTGTGTGAAAGATGCGTTTCCAGTGGAC
AATTATTTGAGGGTCTTTCATATGCAAAAGAAGCCTTTCAATTGCGAAGT
CAACTCTTTAAAAGAAAATTTGCTTTCTCCATTGAGGAGCAGGTTGAAAA
ATGCAATGAAACTGGTGACATTGGTGAAATTGCCCTGAAAGTTATAAATG
GTCCAAAGGATCTTCAAGTGCAGAGAACAGTAGCTAGTGAACTTTGGTCT
TTTGACAGTAGTTCATGGGACCTCTGTGGCTGTTATCTTAGTCCGTGGAA
TGTACTTCAATGTTATCTTGAAAGCATTCTACAGGTTGGATATATTAATG
AAATGACTGGAAATGGAGTTGAGGCTGAAACGTTTTTAGTATGGGGAAAA
TCTATCTCGTGTTCACAGAGCTTACCACTATTTGAAGCTACTTTTTCTTC
TGTCTTGGGGAAATTATATCGTAAGAAACAACTCTGGCATTTCGCAGAGA
AGGAACTGCAAAGTGCTAAACAAATTCTGGTAGGCAGCAGCAGCTATTAT
TCCTGCATAAAATGCAGATTGATGCTGGAAATTAATCTCGACCAACAACT
CGGTGATTTGTTCTGTAATCTTTTTGATAGTACTATCATAAATAATTCAA
AAGAGAGATTATCTCATGCTGAATTTCTGTACAAATCAGCCCTTGAGAAA
CTGAATCATTCTGAGTGGAAGAGAATCAGTTCTGATGAAGAAAATGATGA
GAATATAACAATCAAAACAACTACCATAAATAGTGAAGATGTTGCTGGCA
ATGCTGCCAATCATCCTGCAAATCAGCCAGAGGCAGTAGGTGCCAGAAAG
AGTAGGAAAACTAAGAACGTATCAAAATCTGTGCTGAAGGAGCAATATGT
GATACCTGAACAAAGTTCAAGGGTAACTCGTTCTAGATTTCGATCTTCTC
AAAACCAGAGCTTAAACAGTACCGGTGAAGCACAAGTTGGGCTTGCAAAA
CATTCAAATGGCAATGTTGTGTCCAAACTCTGTGACACTTGTTCAGAAAA
GGAGTCACTCTTTGAAAAAGGAAGTTGTAGGGATGAATTAAGGAATGAAA
CTGCCTGCATTTGTAAGAGAACTAAGTGTTGGCAGTGCCTTCCTACCGAG
ATTATGAAATCAGGGTTACTGAACTACTTCATAAATATGAAATGGGAGTA
TGCCCACAGGAAACTTTTGGTGAGGGTACTTACTGGCATAGGAAAATGCT
TGGAATATCATGGTCAAACACATGAATTGCACAAAGTTGTTTGGCAAAGC
ATATCTGTCCTAGTCAGCAGAAAAAGAATTACTCAGACTTGTTCCTCTGC
TCATGATACTTTCTTGCTTGATTTGATTGGGAGGGAGATCTTGGGTGATG
TTTTTGCTGTTGAACGTGCAGCAATCCTATACAGCATAGGTTGGATAACT
GTGAAGAATATCCATTCTAAAGATACCAGGGCTGTATGCTGTGATCTGTC
CAATGTTCAGTTATCAAAAACGGTTCACTGGCTCAAGCTAGCCTTTGTAC
TCTGCCGTGAGGTTCCTGTACTTTTTCAAAAGGTTTCCAGATTGCTTTCT
GCAATATATCTGCTTTCTGCCACTACTGAGCTCTTCTCTTTGCCATCTTG
CAAAGCACTCTCTGAAAGTCATTGGGCTTCATATTTTCATCAAGCTTCAC
TTGGTACTCATCTTAACTACCAATTCTTTCCAAATACTTGTGGGAGACCC
AACGCTCAATGCTTTGTAGATTCCAGGGACTCACATGCAATTGGTTCATC
TTGCCTACATACAGAGACATCCACCTTGTTAAGGCTTGCTCCTGAATCCG
TTAAAGATCTTGAACAATTTGTAATGGACTTTTATGCGTGCCTTCCTTGC
ACTGCCATCATCTGTATAAGTTTGCTTGGACATGCTTATACTAGTTTGTT
ACAAGAATTGTTACTTAACCCTTCTTGCATTCATGCATGGATGCTGTTGT
CACGGTTGAATTCTAATAATCAACCTGTTGTCTTGCTTCTGCCCCTGGAT
TCAGTTTTAGAAGAAGTTTCAGATGACGCTGCTCCTGATGATGATAATGC
AAGAGCTTGTCAGAACTTGCGTCAGCACATGAATTCGGGTAAAAAGTGGC
ATTGTCCTTGGGGTTCCACTGTGGTTGATGATGTGGCACCAGCTTTTAAA
GGGATATTGGAAGAGAACTTTATAACAACTTCCAACTTTCTTATTGAAGA
TACCAAAAGTACCAGGTCTTTGTGGTGGATGATTAGGAAGAAGGTTGATC
AGCAACTTGGTAAGCTGCTGAGTAACTTGGAAGATTCCTGGCTGGGTCCC
TGGAGGCATGTGCTTCTTGGGGACTGCTTGGACTGCAAAAGCTTGAACAT
GGTGCATAAGAAGCTAGTGCGGGATCTGAAATCTAAATGCAAAATGGACA
TAAATGAGAGTTTCCTTAAACTTGTTCTTGGAGGTGCGAAGTATGATATT
GAGGAAGCATGTTTTTCGTGGCAGTGTTTAAAGGAAGGATGCTACATTGG
CAGGCTTGAACATCCTGGGGAAGAAATTTGCAGGTCTAATGGCATTGATA
AGGTGTCCGCGTTGGCCTCTCAACTAATCCATGAAGCAGTGAATGAGCTT
CATCTGGCGGACACCATCTCTAGGGAACCAATAATTTTAGTGTTGGACTA
TGATGTCCAGATGCTTCCTTGGGAAAGTATACCAATACTAAGACAGCAGG
AGGTTTATCGAATGCCTTCTGTTGGCAGTATCTCTTTGACACTCGAGAGA
AGCTGGCATTATCAAGAGCAAGTTGGTAGGAATGCTGCTGTTTTTCCTTT
GATAGATCCCTTGGATGCATTTTACTTGTTAAATCCCAGTGGTGATCTCA
GCAGCACACAAGCTGAATTTGAGAACTGGTTTAGGGATCAAAACTTCGAG
GGGAAGGCTGGCACTGTGCCGACAGCTGAAGAACTGGCTACAGCCTTGAA
AAGCCATGACCTTTTCTTATATTTTGGCCATGGAAGTGGAGAGCAGTATC
TTTCCAGAAAGGAGATTCAGGAACTGGACAAGTGTGCTGCTACCTTGCTA
ATGGGTTGCAGCAGTGGTTCTCTGGTGCTAAACGGATGCTACATGCCAAG
AGGTATTTCACTATCCTATCTACGGGCAGGTTCTCCCGTTACAATTGCCA
ACTTGTGGGAAGTGACAGACAAAGACATCGACCGGTTTGGTAAGGCCGTG
CTTAGTGCTTGGTTGAGCGAAAGACTGGAACCCGCAGATTGCTCCCAGTG
CGACCAACTGGTCAAAGAATTCGAGGCAATGAAAATAAGAGGGCGTAGTA
AAGGAACTTCCAGGAAGAAAGTGGCAAGCAGCAACATAGACGAAACTAGT
AACGGTGATTCATTGAAGAATACATGTGACCACAGACCAAAGATCGGATC
GTTTGTGGGTCGGGCTCGTGAAACTTGCACCCTCCCTTTCTTGAACGGGG
CATCGCCAGTTTGTTATGGTGTACCCACAGGCATACGGAGAAAGAAAGAT
TTGTCGCCAAATTCGTAA
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protein sequence of Tc02v2_p003220.3

>Tc02v2_p003220.3 ID=Tc02v2_p003220.3|Name=Tc02v2_p003220.3|organism=Theobroma cacao|type=polypeptide|length=2206bp
MPPPTESSLLSDLQTSDDSQRLHSIVSDYLRPVSTLANSKKTSKKADQTT
VRSLAKQFLSFLSKSFPIIYNRLYIQNPSQQQRDILSPFYDTYRQCLTCL
DFISSQLAGGPHMVQIQRLKLVYCLQAWGRYEEGESESFRVLERLRGEAD
SEGKFVPSIDVGGGDSKFGSVVVEAVASVVKNVAMGQSKDCGKYERVLAL
LEEVRPWCSLFRELESVAIEKSHNVLVTFLGRCCRFLVEEMNHFGEDLIR
RFYVECLAEYSRSTTKDQVYKFARRICSSLFSLEGSESSVRIDLVTFVLA
SISRECKVEMDNGAIEFVELADYCANKCRAAGTIFCSTLARNLNNMAGDF
HQATTPVDLILRLYATGLEFTDDFTTSKGAEDNSAIEVLFIERDKLHNLS
ALLGSLRHYFNIGEKETCISSDIEYKNSVNQMHLQPGSKGQCSMTCKDRK
ACIVMYYNTQKFLCQPLAELVNSEKKRILAEIEALTDSSKLYTIQDAFYQ
FCDSFFSLKRCTSESEREEFDDDEVLVASVIAAGFILSIGTKLKMQKSVC
LIKQIIGSGWIQSQGLKYLFVSLHNIGVLMYRSKQMKEALKALKLSYRAS
WTNIQRLCEMFTHKKGFDDNLSEDAIRGLITDACTRSAFLLEVLHVCGNL
KVKRIIVESLENWSLAENLFRQLPGPIPLIKQWVKIQCKLHKNVDVEDSA
PTLCCMLLSSTKVSKRTIGIILEQELLAYQELNHGYPDFCQRMQNKVIDL
LMQDVYATENSPLWKARILIRKGRALRINGIEALKNCILCLSEAISIMKN
FYGETPILGTTACHQLAAAYCLRALCTQEAEPNSEQVYQDICAALDMWLS
IFVPDSCSMDDEFKMVSGNTLPLLYNILDLLSVKGWTKLHSNIHQLIIRL
YKQNNMQIGKCLANLWECRRLSHALCVSPVNEAFIATLSEHCGETSKSID
FWIGCLSGSQPGLLGFQQNLICFFNTFTHRFKTHERDFKSAVPVNNVKQI
VSELISSDPVRSHSLFLAGYLYYDLCERCVSSGQLFEGLSYAKEAFQLRS
QLFKRKFAFSIEEQVEKCNETGDIGEIALKVINGPKDLQVQRTVASELWS
FDSSSWDLCGCYLSPWNVLQCYLESILQVGYINEMTGNGVEAETFLVWGK
SISCSQSLPLFEATFSSVLGKLYRKKQLWHFAEKELQSAKQILVGSSSYY
SCIKCRLMLEINLDQQLGDLFCNLFDSTIINNSKERLSHAEFLYKSALEK
LNHSEWKRISSDEENDENITIKTTTINSEDVAGNAANHPANQPEAVGARK
SRKTKNVSKSVLKEQYVIPEQSSRVTRSRFRSSQNQSLNSTGEAQVGLAK
HSNGNVVSKLCDTCSEKESLFEKGSCRDELRNETACICKRTKCWQCLPTE
IMKSGLLNYFINMKWEYAHRKLLVRVLTGIGKCLEYHGQTHELHKVVWQS
ISVLVSRKRITQTCSSAHDTFLLDLIGREILGDVFAVERAAILYSIGWIT
VKNIHSKDTRAVCCDLSNVQLSKTVHWLKLAFVLCREVPVLFQKVSRLLS
AIYLLSATTELFSLPSCKALSESHWASYFHQASLGTHLNYQFFPNTCGRP
NAQCFVDSRDSHAIGSSCLHTETSTLLRLAPESVKDLEQFVMDFYACLPC
TAIICISLLGHAYTSLLQELLLNPSCIHAWMLLSRLNSNNQPVVLLLPLD
SVLEEVSDDAAPDDDNARACQNLRQHMNSGKKWHCPWGSTVVDDVAPAFK
GILEENFITTSNFLIEDTKSTRSLWWMIRKKVDQQLGKLLSNLEDSWLGP
WRHVLLGDCLDCKSLNMVHKKLVRDLKSKCKMDINESFLKLVLGGAKYDI
EEACFSWQCLKEGCYIGRLEHPGEEICRSNGIDKVSALASQLIHEAVNEL
HLADTISREPIILVLDYDVQMLPWESIPILRQQEVYRMPSVGSISLTLER
SWHYQEQVGRNAAVFPLIDPLDAFYLLNPSGDLSSTQAEFENWFRDQNFE
GKAGTVPTAEELATALKSHDLFLYFGHGSGEQYLSRKEIQELDKCAATLL
MGCSSGSLVLNGCYMPRGISLSYLRAGSPVTIANLWEVTDKDIDRFGKAV
LSAWLSERLEPADCSQCDQLVKEFEAMKIRGRSKGTSRKKVASSNIDETS
NGDSLKNTCDHRPKIGSFVGRARETCTLPFLNGASPVCYGVPTGIRRKKD
LSPNS*
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