Tc02v2_t003220.2

Overview
NameTc02v2_t003220.2
Unique NameTc02v2_t003220.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length5835
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productseparase, transcript variant X3
NoteHypothetical protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607368
GenbankXM_018115693.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g003220Tc02v2_g003220Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p003220.2Tc02v2_p003220.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto85872auto85872Theobroma cacaoexon
exon-auto85873auto85873Theobroma cacaoexon
exon-auto85874auto85874Theobroma cacaoexon
exon-auto85875auto85875Theobroma cacaoexon
exon-auto85876auto85876Theobroma cacaoexon
exon-auto85877auto85877Theobroma cacaoexon
exon-auto85878auto85878Theobroma cacaoexon
exon-auto85879auto85879Theobroma cacaoexon
exon-auto85880auto85880Theobroma cacaoexon
exon-auto85881auto85881Theobroma cacaoexon
exon-auto85882auto85882Theobroma cacaoexon
exon-auto85883auto85883Theobroma cacaoexon
exon-auto85884auto85884Theobroma cacaoexon
exon-auto85885auto85885Theobroma cacaoexon
exon-auto85886auto85886Theobroma cacaoexon
exon-auto85887auto85887Theobroma cacaoexon
exon-auto85888auto85888Theobroma cacaoexon
exon-auto85889auto85889Theobroma cacaoexon
exon-auto85890auto85890Theobroma cacaoexon
exon-auto85891auto85891Theobroma cacaoexon
exon-auto85892auto85892Theobroma cacaoexon
exon-auto85893auto85893Theobroma cacaoexon
exon-auto85894auto85894Theobroma cacaoexon
exon-auto85895auto85895Theobroma cacaoexon
exon-auto85896auto85896Theobroma cacaoexon
exon-auto85897auto85897Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto85898auto85898Theobroma cacaoCDS
CDS-auto85899auto85899Theobroma cacaoCDS
CDS-auto85900auto85900Theobroma cacaoCDS
CDS-auto85901auto85901Theobroma cacaoCDS
CDS-auto85902auto85902Theobroma cacaoCDS
CDS-auto85903auto85903Theobroma cacaoCDS
CDS-auto85904auto85904Theobroma cacaoCDS
CDS-auto85905auto85905Theobroma cacaoCDS
CDS-auto85906auto85906Theobroma cacaoCDS
CDS-auto85907auto85907Theobroma cacaoCDS
CDS-auto85908auto85908Theobroma cacaoCDS
CDS-auto85909auto85909Theobroma cacaoCDS
CDS-auto85910auto85910Theobroma cacaoCDS
CDS-auto85911auto85911Theobroma cacaoCDS
CDS-auto85912auto85912Theobroma cacaoCDS
CDS-auto85913auto85913Theobroma cacaoCDS
CDS-auto85914auto85914Theobroma cacaoCDS
CDS-auto85915auto85915Theobroma cacaoCDS
CDS-auto85916auto85916Theobroma cacaoCDS
CDS-auto85917auto85917Theobroma cacaoCDS
CDS-auto85918auto85918Theobroma cacaoCDS
CDS-auto85919auto85919Theobroma cacaoCDS
CDS-auto85920auto85920Theobroma cacaoCDS
CDS-auto85921auto85921Theobroma cacaoCDS
CDS-auto85922auto85922Theobroma cacaoCDS
CDS-auto85923auto85923Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t003220.2 ID=Tc02v2_t003220.2|Name=Tc02v2_t003220.2|organism=Theobroma cacao|type=mRNA|length=5835bp
ATGCCTCCTCCAACCGAATCCTCTCTCCTCTCCGACCTTCAAACCTCCGA
TGACTCCCAACGCCTCCATTCTATCGTCTCCGACTACCTCCGCCCCGTCT
CCACCCTCGCAAATTCCAAGAAAACCTCCAAGAAAGCCGACCAAACCACC
GTCCGATCCCTCGCCAAGCAGTTCTTGTCCTTCCTTTCCAAATCTTTCCC
AATCATCTACAACCGTCTCTACATACAGAACCCTAGCCAACAACAACGAG
ACATTCTTTCTCCTTTTTATGATACTTACCGACAATGCTTAACTTGTCTC
GATTTCATCTCTTCGCAGTTAGCCGGCGGTCCCCACATGGTTCAGATCCA
GCGGTTGAAACTCGTTTACTGTTTACAAGCCTGGGGTCGATACGAAGAGG
GAGAGAGTGAGTCGTTTAGGGTTTTGGAGAGGCTTAGAGGAGAAGCCGAT
TCAGAAGGGAAATTCGTGCCGAGTATAGATGTTGGTGGCGGTGATTCGAA
GTTTGGATCTGTTGTAGTAGAGGCGGTGGCTTCCGTTGTGAAAAATGTGG
CTATGGGACAGAGTAAAGATTGTGGGAAATATGAAAGAGTTCTTGCTTTG
TTGGAGGAAGTTAGGCCTTGGTGCAGCCTTTTCAGGGAATTAGAATCCGT
TGCCATTGAGAAATCGCACAATGTGCTCGTTACCTTTCTGGGTAGATGCT
GTCGGTTTTTAGTTGAAGAGATGAATCATTTTGGCGAGGATTTGATTCGC
CGGTTCTACGTAGAATGTTTGGCTGAGTATTCAAGGTCGACAACGAAAGA
TCAAGTTTATAAGTTTGCCCGCAGAATATGTTCCTCTTTGTTCTCGCTAG
AGGGGAGCGAGAGCTCAGTTCGTATTGACTTAGTAACGTTTGTGTTGGCC
TCCATTTCCCGTGAATGCAAGGTTGAAATGGATAATGGTGCAATAGAGTT
TGTTGAACTTGCTGATTATTGTGCCAATAAGTGTCGAGCTGCCGGTACAA
TTTTTTGTAGTACTCTTGCAAGAAATTTAAACAACATGGCCGGTGATTTT
CATCAGGCTACAACCCCTGTTGATCTGATACTGAGGCTTTATGCAACTGG
GCTTGAATTCACTGATGATTTCACCACCTCCAAAGGTGCAGAAGACAATT
CTGCTATTGAAGTTTTGTTTATTGAAAGGGATAAGCTGCACAATTTGTCT
GCTTTACTTGGTTCGCTCAGACATTACTTTAACATTGGTGAAAAAGAGAC
TTGCATTTCATCTGATATTGAATATAAGAATTCTGTTAATCAAATGCATT
TGCAACCTGGGTCCAAGGGTCAGTGTTCTATGACTTGCAAGGACAGAAAG
GCTTGTATAGTAATGTACTATAATACACAGAAATTCTTGTGTCAGCCACT
TGCTGAACTAGTGAATTCAGAGAAAAAGCGCATACTTGCTGAAATCGAAG
CTTTAACAGATTCTAGCAAGCTTTACACTATCCAGGACGCATTTTATCAG
TTCTGTGATAGTTTCTTTTCTCTTAAACGCTGTACATCTGAATCAGAGAG
AGAAGAATTTGATGATGATGAAGTGTTGGTAGCTAGTGTGATTGCAGCTG
GGTTCATTCTTTCCATTGGCACAAAGCTTAAAATGCAGAAGAGTGTGTGT
TTAATCAAGCAAATCATTGGCAGTGGATGGATTCAATCTCAGGGACTTAA
ATATCTCTTTGTCTCTCTGCATAATATTGGTGTACTTATGTACAGAAGTA
AGCAAATGAAAGAGGCTTTGAAGGCTTTAAAACTGTCTTATAGAGCATCA
TGGACGAATATTCAACGTCTCTGTGAGATGTTTACTCATAAGAAGGGTTT
TGATGATAATCTGTCAGAAGATGCTATTAGAGGTTTGATAACTGACGCAT
GCACTAGAAGTGCTTTTCTTTTGGAAGTTCTCCATGTATGCGGCAATCTT
AAGGTGAAAAGAATTATTGTGGAGAGCCTTGAGAACTGGTCTTTGGCTGA
AAATTTGTTCAGACAGTTGCCAGGTCCTATTCCTTTGATAAAACAATGGG
TTAAGATTCAGTGTAAACTTCATAAAAATGTGGATGTAGAGGATAGTGCT
CCAACCTTATGTTGTATGCTGTTGTCTTCTACAAAAGTGTCAAAGAGGAC
AATTGGCATAATTTTAGAGCAGGAGCTTCTTGCATATCAGGAATTGAATC
ATGGGTACCCAGATTTTTGTCAGAGAATGCAAAATAAAGTTATTGATTTG
CTTATGCAAGATGTTTATGCCACAGAAAATAGTCCCTTATGGAAAGCAAG
AATTTTAATTAGAAAGGGAAGAGCACTAAGGATTAATGGGATTGAAGCTT
TGAAGAACTGTATTTTGTGCTTGTCTGAAGCTATATCTATTATGAAAAAC
TTCTATGGTGAAACACCTATCCTGGGAACTACAGCCTGCCATCAATTAGC
TGCTGCTTATTGCTTACGTGCACTATGTACCCAGGAAGCTGAACCAAACT
CGGAGCAAGTTTATCAAGATATCTGTGCTGCCTTAGATATGTGGTTGAGC
ATATTCGTTCCTGATTCTTGCTCCATGGATGATGAGTTCAAAATGGTGTC
TGGAAACACACTGCCACTGCTATATAATATACTTGATTTGCTATCAGTGA
AGGGTTGGACAAAATTGCACAGTAACATACATCAACTGATAATTAGATTA
TACAAGCAGAACAATATGCAAATTGGGAAATGCCTTGCAAACCTTTGGGA
ATGTAGGAGGCTTAGTCATGCACTTTGTGTTTCTCCAGTAAATGAGGCAT
TTATTGCAACCTTATCAGAGCATTGTGGTGAAACTTCCAAATCCATTGAT
TTCTGGATAGGTTGTCTAAGTGGGTCCCAACCTGGACTTCTTGGATTCCA
ACAGAACCTCATATGTTTCTTTAACACTTTCACCCATCGCTTTAAAACTC
ATGAAAGAGATTTCAAGTCAGCTGTCCCAGTTAACAATGTAAAACAGATT
GTCTCTGAACTCATTTCTAGTGATCCTGTACGCAGTCATTCTCTCTTCCT
TGCGGGGTACCTCTACTATGATTTGTGTGAAAGATGCGTTTCCAGTGGAC
AATTATTTGAGGGTCTTTCATATGCAAAAGAAGCCTTTCAATTGCGAAGT
CAACTCTTTAAAAGAAAATTTGCTTTCTCCATTGAGGAGCAGGTTGAAAA
ATGCAATGAAACTGGTGACATTGGTGAAATTGCCCTGAAAGTTATAAATG
GTCCAAAGGATCTTCAAGTGCAGAGAACAGTAGCTAGTGAACTTTGGTCT
TTTGACAGTAGTTCATGGGACCTCTGTGGCTGTTATCTTAGTCCGTGGAA
TGTACTTCAATGTTATCTTGAAAGCATTCTACAGGTTGGATATATTAATG
AAATGACTGGAAATGGAGTTGAGGCTGAAACGTTTTTAGTATGGGGAAAA
TCTATCTCGTGTTCACAGAGCTTACCACTATTTGAAGCTACTTTTTCTTC
TGTCTTGGGAAAATGCTTGGAATATCATGGTCAAACACATGAATTGCACA
AAGTTGTTTGGCAAAGCATATCTGTCCTAGTCAGCAGAAAAAGAATTACT
CAGACTTGTTCCTCTGCTCATGATACTTTCTTGCTTGATTTGATTGGGAG
GGAGATCTTGGGTGATGTTTTTGCTGTTGAACGTGCAGCAATCCTATACA
GCATAGGTTGGATAACTGTGAAGAATATCCATTCTAAAGATACCAGGGCT
GTATGCTGTGATCTGTCCAATGTTCAGTTATCAAAAACGGTTCACTGGCT
CAAGCTAGCCTTTGTACTCTGCCGTGAGGTTCCTGTACTTTTTCAAAAGG
TTTCCAGATTGCTTTCTGCAATATATCTGCTTTCTGCCACTACTGAGCTC
TTCTCTTTGCCATCTTGCAAAGCACTCTCTGAAAGTCATTGGGCTTCATA
TTTTCATCAAGCTTCACTTGGTACTCATCTTAACTACCAATTCTTTCCAA
ATACTTGTGGGAGACCCAACGCTCAATGCTTTGTAGATTCCAGGGACTCA
CATGCAATTGGTTCATCTTGCCTACATACAGAGACATCCACCTTGTTAAG
GCTTGCTCCTGAATCCGTTAAAGATCTTGAACAATTTGTAATGGACTTTT
ATGCGTGCCTTCCTTGCACTGCCATCATCTGTATAAGTTTGCTTGGACAT
GCTTATACTAGTTTGTTACAAGAATTGTTACTTAACCCTTCTTGCATTCA
TGCATGGATGCTGTTGTCACGGTTGAATTCTAATAATCAACCTGTTGTCT
TGCTTCTGCCCCTGGATTCAGTTTTAGAAGAAGTTTCAGATGACGCTGCT
CCTGATGATGATAATGCAAGAGCTTGTCAGAACTTGCGTCAGCACATGAA
TTCGGGTAAAAAGTGGCATTGTCCTTGGGGTTCCACTGTGGTTGATGATG
TGGCACCAGCTTTTAAAGGGATATTGGAAGAGAACTTTATAACAACTTCC
AACTTTCTTATTGAAGATACCAAAAGTACCAGGTCTTTGTGGTGGATGAT
TAGGAAGAAGGTTGATCAGCAACTTGGTAAGCTGCTGAGTAACTTGGAAG
ATTCCTGGCTGGGTCCCTGGAGGCATGTGCTTCTTGGGGACTGCTTGGAC
TGCAAAAGCTTGAACATGGTGCATAAGAAGCTAGTGCGGGATCTGAAATC
TAAATGCAAAATGGACATAAATGAGAGTTTCCTTAAACTTGTTCTTGGAG
GTGCGAAGTATGATATTGAGGAAGCATGTTTTTCGTGGCAGTGTTTAAAG
GAAGGATGCTACATTGGCAGGCTTGAACATCCTGGGGAAGAAATTTGCAG
GTCTAATGGCATTGATAAGGTGTCCGCGTTGGCCTCTCAACTAATCCATG
AAGCAGTGAATGAGCTTCATCTGGCGGACACCATCTCTAGGGAACCAATA
ATTTTAGTGTTGGACTATGATGTCCAGATGCTTCCTTGGGAAAGTATACC
AATACTAAGACAGCAGGAGGTTTATCGAATGCCTTCTGTTGGCAGTATCT
CTTTGACACTCGAGAGAAGCTGGCATTATCAAGAGCAAGTTGGTAGGAAT
GCTGCTGTTTTTCCTTTGATAGATCCCTTGGATGCATTTTACTTGTTAAA
TCCCAGTGGTGATCTCAGCAGCACACAAGCTGAATTTGAGAACTGGTTTA
GGGATCAAAACTTCGAGGGGAAGGCTGGCACTGTGCCGACAGCTGAAGAA
CTGGCTACAGCCTTGAAAAGCCATGACCTTTTCTTATATTTTGGCCATGG
AAGTGGAGAGCAGTATCTTTCCAGAAAGGAGATTCAGGAACTGGACAAGT
GTGCTGCTACCTTGCTAATGGGTTGCAGCAGTGGTTCTCTGGTGCTAAAC
GGATGCTACATGCCAAGAGGTATTTCACTATCCTATCTACGGGCAGGTTC
TCCCGTTACAATTGCCAACTTGTGGGAAGTGACAGACAAAGACATCGACC
GGTTTGGTAAGGCCGTGCTTAGTGCTTGGTTGAGCGAAAGACTGGAACCC
GCAGATTGCTCCCAGTGCGACCAACTGGTCAAAGAATTCGAGGCAATGAA
AATAAGAGGGCGTAGTAAAGGAACTTCCAGGAAGAAAGTGGCAAGCAGCA
ACATAGACGAAACTAGTAACGGTGATTCATTGAAGAATACATGTGACCAC
AGACCAAAGATCGGATCGTTTGTGGGTCGGGCTCGTGAAACTTGCACCCT
CCCTTTCTTGAACGGGGCATCGCCAGTTTGTTATGGTGTACCCACAGGCA
TACGGAGAAAGAAAGATTTGTCGCCAAATTCGTAA
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protein sequence of Tc02v2_p003220.2

>Tc02v2_p003220.2 ID=Tc02v2_p003220.2|Name=Tc02v2_p003220.2|organism=Theobroma cacao|type=polypeptide|length=1945bp
MPPPTESSLLSDLQTSDDSQRLHSIVSDYLRPVSTLANSKKTSKKADQTT
VRSLAKQFLSFLSKSFPIIYNRLYIQNPSQQQRDILSPFYDTYRQCLTCL
DFISSQLAGGPHMVQIQRLKLVYCLQAWGRYEEGESESFRVLERLRGEAD
SEGKFVPSIDVGGGDSKFGSVVVEAVASVVKNVAMGQSKDCGKYERVLAL
LEEVRPWCSLFRELESVAIEKSHNVLVTFLGRCCRFLVEEMNHFGEDLIR
RFYVECLAEYSRSTTKDQVYKFARRICSSLFSLEGSESSVRIDLVTFVLA
SISRECKVEMDNGAIEFVELADYCANKCRAAGTIFCSTLARNLNNMAGDF
HQATTPVDLILRLYATGLEFTDDFTTSKGAEDNSAIEVLFIERDKLHNLS
ALLGSLRHYFNIGEKETCISSDIEYKNSVNQMHLQPGSKGQCSMTCKDRK
ACIVMYYNTQKFLCQPLAELVNSEKKRILAEIEALTDSSKLYTIQDAFYQ
FCDSFFSLKRCTSESEREEFDDDEVLVASVIAAGFILSIGTKLKMQKSVC
LIKQIIGSGWIQSQGLKYLFVSLHNIGVLMYRSKQMKEALKALKLSYRAS
WTNIQRLCEMFTHKKGFDDNLSEDAIRGLITDACTRSAFLLEVLHVCGNL
KVKRIIVESLENWSLAENLFRQLPGPIPLIKQWVKIQCKLHKNVDVEDSA
PTLCCMLLSSTKVSKRTIGIILEQELLAYQELNHGYPDFCQRMQNKVIDL
LMQDVYATENSPLWKARILIRKGRALRINGIEALKNCILCLSEAISIMKN
FYGETPILGTTACHQLAAAYCLRALCTQEAEPNSEQVYQDICAALDMWLS
IFVPDSCSMDDEFKMVSGNTLPLLYNILDLLSVKGWTKLHSNIHQLIIRL
YKQNNMQIGKCLANLWECRRLSHALCVSPVNEAFIATLSEHCGETSKSID
FWIGCLSGSQPGLLGFQQNLICFFNTFTHRFKTHERDFKSAVPVNNVKQI
VSELISSDPVRSHSLFLAGYLYYDLCERCVSSGQLFEGLSYAKEAFQLRS
QLFKRKFAFSIEEQVEKCNETGDIGEIALKVINGPKDLQVQRTVASELWS
FDSSSWDLCGCYLSPWNVLQCYLESILQVGYINEMTGNGVEAETFLVWGK
SISCSQSLPLFEATFSSVLGKCLEYHGQTHELHKVVWQSISVLVSRKRIT
QTCSSAHDTFLLDLIGREILGDVFAVERAAILYSIGWITVKNIHSKDTRA
VCCDLSNVQLSKTVHWLKLAFVLCREVPVLFQKVSRLLSAIYLLSATTEL
FSLPSCKALSESHWASYFHQASLGTHLNYQFFPNTCGRPNAQCFVDSRDS
HAIGSSCLHTETSTLLRLAPESVKDLEQFVMDFYACLPCTAIICISLLGH
AYTSLLQELLLNPSCIHAWMLLSRLNSNNQPVVLLLPLDSVLEEVSDDAA
PDDDNARACQNLRQHMNSGKKWHCPWGSTVVDDVAPAFKGILEENFITTS
NFLIEDTKSTRSLWWMIRKKVDQQLGKLLSNLEDSWLGPWRHVLLGDCLD
CKSLNMVHKKLVRDLKSKCKMDINESFLKLVLGGAKYDIEEACFSWQCLK
EGCYIGRLEHPGEEICRSNGIDKVSALASQLIHEAVNELHLADTISREPI
ILVLDYDVQMLPWESIPILRQQEVYRMPSVGSISLTLERSWHYQEQVGRN
AAVFPLIDPLDAFYLLNPSGDLSSTQAEFENWFRDQNFEGKAGTVPTAEE
LATALKSHDLFLYFGHGSGEQYLSRKEIQELDKCAATLLMGCSSGSLVLN
GCYMPRGISLSYLRAGSPVTIANLWEVTDKDIDRFGKAVLSAWLSERLEP
ADCSQCDQLVKEFEAMKIRGRSKGTSRKKVASSNIDETSNGDSLKNTCDH
RPKIGSFVGRARETCTLPFLNGASPVCYGVPTGIRRKKDLSPNS*
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