Tc02v2_t003220.1

Overview
NameTc02v2_t003220.1
Unique NameTc02v2_t003220.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length6609
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productseparase, transcript variant X2
NotePutative Separase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607368
GenbankXM_018115692.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g003220Tc02v2_g003220Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p003220.1Tc02v2_p003220.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto85816auto85816Theobroma cacaoexon
exon-auto85817auto85817Theobroma cacaoexon
exon-auto85818auto85818Theobroma cacaoexon
exon-auto85819auto85819Theobroma cacaoexon
exon-auto85820auto85820Theobroma cacaoexon
exon-auto85821auto85821Theobroma cacaoexon
exon-auto85822auto85822Theobroma cacaoexon
exon-auto85823auto85823Theobroma cacaoexon
exon-auto85824auto85824Theobroma cacaoexon
exon-auto85825auto85825Theobroma cacaoexon
exon-auto85826auto85826Theobroma cacaoexon
exon-auto85827auto85827Theobroma cacaoexon
exon-auto85828auto85828Theobroma cacaoexon
exon-auto85829auto85829Theobroma cacaoexon
exon-auto85830auto85830Theobroma cacaoexon
exon-auto85831auto85831Theobroma cacaoexon
exon-auto85832auto85832Theobroma cacaoexon
exon-auto85833auto85833Theobroma cacaoexon
exon-auto85834auto85834Theobroma cacaoexon
exon-auto85835auto85835Theobroma cacaoexon
exon-auto85836auto85836Theobroma cacaoexon
exon-auto85837auto85837Theobroma cacaoexon
exon-auto85838auto85838Theobroma cacaoexon
exon-auto85839auto85839Theobroma cacaoexon
exon-auto85840auto85840Theobroma cacaoexon
exon-auto85841auto85841Theobroma cacaoexon
exon-auto85842auto85842Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto85843auto85843Theobroma cacaoCDS
CDS-auto85844auto85844Theobroma cacaoCDS
CDS-auto85845auto85845Theobroma cacaoCDS
CDS-auto85846auto85846Theobroma cacaoCDS
CDS-auto85847auto85847Theobroma cacaoCDS
CDS-auto85848auto85848Theobroma cacaoCDS
CDS-auto85849auto85849Theobroma cacaoCDS
CDS-auto85850auto85850Theobroma cacaoCDS
CDS-auto85851auto85851Theobroma cacaoCDS
CDS-auto85852auto85852Theobroma cacaoCDS
CDS-auto85853auto85853Theobroma cacaoCDS
CDS-auto85854auto85854Theobroma cacaoCDS
CDS-auto85855auto85855Theobroma cacaoCDS
CDS-auto85856auto85856Theobroma cacaoCDS
CDS-auto85857auto85857Theobroma cacaoCDS
CDS-auto85858auto85858Theobroma cacaoCDS
CDS-auto85859auto85859Theobroma cacaoCDS
CDS-auto85860auto85860Theobroma cacaoCDS
CDS-auto85861auto85861Theobroma cacaoCDS
CDS-auto85862auto85862Theobroma cacaoCDS
CDS-auto85863auto85863Theobroma cacaoCDS
CDS-auto85864auto85864Theobroma cacaoCDS
CDS-auto85865auto85865Theobroma cacaoCDS
CDS-auto85866auto85866Theobroma cacaoCDS
CDS-auto85867auto85867Theobroma cacaoCDS
CDS-auto85868auto85868Theobroma cacaoCDS
CDS-auto85869auto85869Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t003220.1 ID=Tc02v2_t003220.1|Name=Tc02v2_t003220.1|organism=Theobroma cacao|type=mRNA|length=6609bp
ATGCCTCCTCCAACCGAATCCTCTCTCCTCTCCGACCTTCAAACCTCCGA
TGACTCCCAACGCCTCCATTCTATCGTCTCCGACTACCTCCGCCCCGTCT
CCACCCTCGCAAATTCCAAGAAAACCTCCAAGAAAGCCGACCAAACCACC
GTCCGATCCCTCGCCAAGCAGTTCTTGTCCTTCCTTTCCAAATCTTTCCC
AATCATCTACAACCGTCTCTACATACAGAACCCTAGCCAACAACAACGAG
ACATTCTTTCTCCTTTTTATGATACTTACCGACAATGCTTAACTTGTCTC
GATTTCATCTCTTCGCAGTTAGCCGGCGGTCCCCACATGGTTCAGATCCA
GCGGTTGAAACTCGTTTACTGTTTACAAGCCTGGGGTCGATACGAAGAGG
GAGAGAGTGAGTCGTTTAGGGTTTTGGAGAGGCTTAGAGGAGAAGCCGAT
TCAGAAGGGAAATTCGTGCCGAGTATAGATGTTGGTGGCGGTGATTCGAA
GTTTGGATCTGTTGTAGTAGAGGCGGTGGCTTCCGTTGTGAAAAATGTGG
CTATGGGACAGAGTAAAGATTGTGGGAAATATGAAAGAGTTCTTGCTTTG
TTGGAGGAAGTTAGGCCTTGGTGCAGGGAATTAGAATCCGTTGCCATTGA
GAAATCGCACAATGTGCTCGTTACCTTTCTGGGTAGATGCTGTCGGTTTT
TAGTTGAAGAGATGAATCATTTTGGCGAGGATTTGATTCGCCGGTTCTAC
GTAGAATGTTTGGCTGAGTATTCAAGGTCGACAACGAAAGATCAAGTTTA
TAAGTTTGCCCGCAGAATATGTTCCTCTTTGTTCTCGCTAGAGGGGAGCG
AGAGCTCAGTTCGTATTGACTTAGTAACGTTTGTGTTGGCCTCCATTTCC
CGTGAATGCAAGGTTGAAATGGATAATGGTGCAATAGAGTTTGTTGAACT
TGCTGATTATTGTGCCAATAAGTGTCGAGCTGCCGGTACAATTTTTTGTA
GTACTCTTGCAAGAAATTTAAACAACATGGCCGGTGATTTTCATCAGGCT
ACAACCCCTGTTGATCTGATACTGAGGCTTTATGCAACTGGGCTTGAATT
CACTGATGATTTCACCACCTCCAAAGGTGCAGAAGACAATTCTGCTATTG
AAGTTTTGTTTATTGAAAGGGATAAGCTGCACAATTTGTCTGCTTTACTT
GGTTCGCTCAGACATTACTTTAACATTGGTGAAAAAGAGACTTGCATTTC
ATCTGATATTGAATATAAGAATTCTGTTAATCAAATGCATTTGCAACCTG
GGTCCAAGGGTCAGTGTTCTATGACTTGCAAGGACAGAAAGGCTTGTATA
GTAATGTACTATAATACACAGAAATTCTTGTGTCAGCCACTTGCTGAACT
AGTGAATTCAGAGAAAAAGCGCATACTTGCTGAAATCGAAGCTTTAACAG
ATTCTAGCAAGCTTTACACTATCCAGGACGCATTTTATCAGTTCTGTGAT
AGTTTCTTTTCTCTTAAACGCTGTACATCTGAATCAGAGAGAGAAGAATT
TGATGATGATGAAGTGTTGGTAGCTAGTGTGATTGCAGCTGGGTTCATTC
TTTCCATTGGCACAAAGCTTAAAATGCAGAAGAGTGTGTGTTTAATCAAG
CAAATCATTGGCAGTGGATGGATTCAATCTCAGGGACTTAAATATCTCTT
TGTCTCTCTGCATAATATTGGTGTACTTATGTACAGAAGTAAGCAAATGA
AAGAGGCTTTGAAGGCTTTAAAACTGTCTTATAGAGCATCATGGACGAAT
ATTCAACGTCTCTGTGAGATGTTTACTCATAAGAAGGGTTTTGATGATAA
TCTGTCAGAAGATGCTATTAGAGGTTTGATAACTGACGCATGCACTAGAA
GTGCTTTTCTTTTGGAAGTTCTCCATGTATGCGGCAATCTTAAGGTGAAA
AGAATTATTGTGGAGAGCCTTGAGAACTGGTCTTTGGCTGAAAATTTGTT
CAGACAGTTGCCAGGTCCTATTCCTTTGATAAAACAATGGGTTAAGATTC
AGTGTAAACTTCATAAAAATGTGGATGTAGAGGATAGTGCTCCAACCTTA
TGTTGTATGCTGTTGTCTTCTACAAAAGTGTCAAAGAGGACAATTGGCAT
AATTTTAGAGCAGGAGCTTCTTGCATATCAGGAATTGAATCATGGGTACC
CAGATTTTTGTCAGAGAATGCAAAATAAAGTTATTGATTTGCTTATGCAA
GATGTTTATGCCACAGAAAATAGTCCCTTATGGAAAGCAAGAATTTTAAT
TAGAAAGGGAAGAGCACTAAGGATTAATGGGATTGAAGCTTTGAAGAACT
GTATTTTGTGCTTGTCTGAAGCTATATCTATTATGAAAAACTTCTATGGT
GAAACACCTATCCTGGGAACTACAGCCTGCCATCAATTAGCTGCTGCTTA
TTGCTTACGTGCACTATGTACCCAGGAAGCTGAACCAAACTCGGAGCAAG
TTTATCAAGATATCTGTGCTGCCTTAGATATGTGGTTGAGCATATTCGTT
CCTGATTCTTGCTCCATGGATGATGAGTTCAAAATGGTGTCTGGAAACAC
ACTGCCACTGCTATATAATATACTTGATTTGCTATCAGTGAAGGGTTGGA
CAAAATTGCACAGTAACATACATCAACTGATAATTAGATTATACAAGCAG
AACAATATGCAAATTGGGAAATGCCTTGCAAACCTTTGGGAATGTAGGAG
GCTTAGTCATGCACTTTGTGTTTCTCCAGTAAATGAGGCATTTATTGCAA
CCTTATCAGAGCATTGTGGTGAAACTTCCAAATCCATTGATTTCTGGATA
GGTTGTCTAAGTGGGTCCCAACCTGGACTTCTTGGATTCCAACAGAACCT
CATATGTTTCTTTAACACTTTCACCCATCGCTTTAAAACTCATGAAAGAG
ATTTCAAGTCAGCTGTCCCAGTTAACAATGTAAAACAGATTGTCTCTGAA
CTCATTTCTAGTGATCCTGTACGCAGTCATTCTCTCTTCCTTGCGGGGTA
CCTCTACTATGATTTGTGTGAAAGATGCGTTTCCAGTGGACAATTATTTG
AGGGTCTTTCATATGCAAAAGAAGCCTTTCAATTGCGAAGTCAACTCTTT
AAAAGAAAATTTGCTTTCTCCATTGAGGAGCAGGTTGAAAAATGCAATGA
AACTGGTGACATTGGTGAAATTGCCCTGAAAGTTATAAATGGTCCAAAGG
ATCTTCAAGTGCAGAGAACAGTAGCTAGTGAACTTTGGTCTTTTGACAGT
AGTTCATGGGACCTCTGTGGCTGTTATCTTAGTCCGTGGAATGTACTTCA
ATGTTATCTTGAAAGCATTCTACAGGTTGGATATATTAATGAAATGACTG
GAAATGGAGTTGAGGCTGAAACGTTTTTAGTATGGGGAAAATCTATCTCG
TGTTCACAGAGCTTACCACTATTTGAAGCTACTTTTTCTTCTGTCTTGGG
GAAATTATATCGTAAGAAACAACTCTGGCATTTCGCAGAGAAGGAACTGC
AAAGTGCTAAACAAATTCTGGTAGGCAGCAGCAGCTATTATTCCTGCATA
AAATGCAGATTGATGCTGGAAATTAATCTCGACCAACAACTCGGTGATTT
GTTCTGTAATCTTTTTGATAGTACTATCATAAATAATTCAAAAGAGAGAT
TATCTCATGCTGAATTTCTGTACAAATCAGCCCTTGAGAAACTGAATCAT
TCTGAGTGGAAGAGAATCAGTTCTGATGAAGAAAATGATGAGAATATAAC
AATCAAAACAACTACCATAAATAGTGAAGATGTTGCTGGCAATGCTGCCA
ATCATCCTGCAAATCAGCCAGAGGCAGTAGGTGCCAGAAAGAGTAGGAAA
ACTAAGAACGTATCAAAATCTGTGCTGAAGGAGCAATATGTGATACCTGA
ACAAAGTTCAAGGGTAACTCGTTCTAGATTTCGATCTTCTCAAAACCAGA
GCTTAAACAGTACCGGTGAAGCACAAGTTGGGCTTGCAAAACATTCAAAT
GGCAATGTTGTGTCCAAACTCTGTGACACTTGTTCAGAAAAGGAGTCACT
CTTTGAAAAAGGAAGTTGTAGGGATGAATTAAGGAATGAAACTGCCTGCA
TTTGTAAGAGAACTAAGTGTTGGCAGTGCCTTCCTACCGAGATTATGAAA
TCAGGGTTACTGAACTACTTCATAAATATGAAATGGGAGTATGCCCACAG
GAAACTTTTGGTGAGGGTACTTACTGGCATAGGAAAATGCTTGGAATATC
ATGGTCAAACACATGAATTGCACAAAGTTGTTTGGCAAAGCATATCTGTC
CTAGTCAGCAGAAAAAGAATTACTCAGACTTGTTCCTCTGCTCATGATAC
TTTCTTGCTTGATTTGATTGGGAGGGAGATCTTGGGTGATGTTTTTGCTG
TTGAACGTGCAGCAATCCTATACAGCATAGGTTGGATAACTGTGAAGAAT
ATCCATTCTAAAGATACCAGGGCTGTATGCTGTGATCTGTCCAATGTTCA
GTTATCAAAAACGGTTCACTGGCTCAAGCTAGCCTTTGTACTCTGCCGTG
AGGTTCCTGTACTTTTTCAAAAGGTTTCCAGATTGCTTTCTGCAATATAT
CTGCTTTCTGCCACTACTGAGCTCTTCTCTTTGCCATCTTGCAAAGCACT
CTCTGAAAGTCATTGGGCTTCATATTTTCATCAAGCTTCACTTGGTACTC
ATCTTAACTACCAATTCTTTCCAAATACTTGTGGGAGACCCAACGCTCAA
TGCTTTGTAGATTCCAGGGACTCACATGCAATTGGTTCATCTTGCCTACA
TACAGAGACATCCACCTTGTTAAGGCTTGCTCCTGAATCCGTTAAAGATC
TTGAACAATTTGTAATGGACTTTTATGCGTGCCTTCCTTGCACTGCCATC
ATCTGTATAAGTTTGCTTGGACATGCTTATACTAGTTTGTTACAAGAATT
GTTACTTAACCCTTCTTGCATTCATGCATGGATGCTGTTGTCACGGTTGA
ATTCTAATAATCAACCTGTTGTCTTGCTTCTGCCCCTGGATTCAGTTTTA
GAAGAAGTTTCAGATGACGCTGCTCCTGATGATGATAATGCAAGAGCTTG
TCAGAACTTGCGTCAGCACATGAATTCGGGTAAAAAGTGGCATTGTCCTT
GGGGTTCCACTGTGGTTGATGATGTGGCACCAGCTTTTAAAGGGATATTG
GAAGAGAACTTTATAACAACTTCCAACTTTCTTATTGAAGATACCAAAAG
TACCAGGTCTTTGTGGTGGATGATTAGGAAGAAGGTTGATCAGCAACTTG
GTAAGCTGCTGAGTAACTTGGAAGATTCCTGGCTGGGTCCCTGGAGGCAT
GTGCTTCTTGGGGACTGCTTGGACTGCAAAAGCTTGAACATGGTGCATAA
GAAGCTAGTGCGGGATCTGAAATCTAAATGCAAAATGGACATAAATGAGA
GTTTCCTTAAACTTGTTCTTGGAGGTGCGAAGTATGATATTGAGGAAGCA
TGTTTTTCGTGGCAGTGTTTAAAGGAAGGATGCTACATTGGCAGGCTTGA
ACATCCTGGGGAAGAAATTTGCAGGTCTAATGGCATTGATAAGGTGTCCG
CGTTGGCCTCTCAACTAATCCATGAAGCAGTGAATGAGCTTCATCTGGCG
GACACCATCTCTAGGGAACCAATAATTTTAGTGTTGGACTATGATGTCCA
GATGCTTCCTTGGGAAAGTATACCAATACTAAGACAGCAGGAGGTTTATC
GAATGCCTTCTGTTGGCAGTATCTCTTTGACACTCGAGAGAAGCTGGCAT
TATCAAGAGCAAGTTGGTAGGAATGCTGCTGTTTTTCCTTTGATAGATCC
CTTGGATGCATTTTACTTGTTAAATCCCAGTGGTGATCTCAGCAGCACAC
AAGCTGAATTTGAGAACTGGTTTAGGGATCAAAACTTCGAGGGGAAGGCT
GGCACTGTGCCGACAGCTGAAGAACTGGCTACAGCCTTGAAAAGCCATGA
CCTTTTCTTATATTTTGGCCATGGAAGTGGAGAGCAGTATCTTTCCAGAA
AGGAGATTCAGGAACTGGACAAGTGTGCTGCTACCTTGCTAATGGGTTGC
AGCAGTGGTTCTCTGGTGCTAAACGGATGCTACATGCCAAGAGGTATTTC
ACTATCCTATCTACGGGCAGGTTCTCCCGTTACAATTGCCAACTTGTGGG
AAGTGACAGACAAAGACATCGACCGGTTTGGTAAGGCCGTGCTTAGTGCT
TGGTTGAGCGAAAGACTGGAACCCGCAGATTGCTCCCAGTGCGACCAACT
GGTCAAAGAATTCGAGGCAATGAAAATAAGAGGGCGTAGTAAAGGAACTT
CCAGGAAGAAAGTGGCAAGCAGCAACATAGACGAAACTAGTAACGGTGAT
TCATTGAAGAATACATGTGACCACAGACCAAAGATCGGATCGTTTGTGGG
TCGGGCTCGTGAAACTTGCACCCTCCCTTTCTTGAACGGGGCATCGCCAG
TTTGTTATGGTGTACCCACAGGCATACGGAGAAAGAAAGATTTGTCGCCA
AATTCGTAA
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protein sequence of Tc02v2_p003220.1

>Tc02v2_p003220.1 ID=Tc02v2_p003220.1|Name=Tc02v2_p003220.1|organism=Theobroma cacao|type=polypeptide|length=2203bp
MPPPTESSLLSDLQTSDDSQRLHSIVSDYLRPVSTLANSKKTSKKADQTT
VRSLAKQFLSFLSKSFPIIYNRLYIQNPSQQQRDILSPFYDTYRQCLTCL
DFISSQLAGGPHMVQIQRLKLVYCLQAWGRYEEGESESFRVLERLRGEAD
SEGKFVPSIDVGGGDSKFGSVVVEAVASVVKNVAMGQSKDCGKYERVLAL
LEEVRPWCRELESVAIEKSHNVLVTFLGRCCRFLVEEMNHFGEDLIRRFY
VECLAEYSRSTTKDQVYKFARRICSSLFSLEGSESSVRIDLVTFVLASIS
RECKVEMDNGAIEFVELADYCANKCRAAGTIFCSTLARNLNNMAGDFHQA
TTPVDLILRLYATGLEFTDDFTTSKGAEDNSAIEVLFIERDKLHNLSALL
GSLRHYFNIGEKETCISSDIEYKNSVNQMHLQPGSKGQCSMTCKDRKACI
VMYYNTQKFLCQPLAELVNSEKKRILAEIEALTDSSKLYTIQDAFYQFCD
SFFSLKRCTSESEREEFDDDEVLVASVIAAGFILSIGTKLKMQKSVCLIK
QIIGSGWIQSQGLKYLFVSLHNIGVLMYRSKQMKEALKALKLSYRASWTN
IQRLCEMFTHKKGFDDNLSEDAIRGLITDACTRSAFLLEVLHVCGNLKVK
RIIVESLENWSLAENLFRQLPGPIPLIKQWVKIQCKLHKNVDVEDSAPTL
CCMLLSSTKVSKRTIGIILEQELLAYQELNHGYPDFCQRMQNKVIDLLMQ
DVYATENSPLWKARILIRKGRALRINGIEALKNCILCLSEAISIMKNFYG
ETPILGTTACHQLAAAYCLRALCTQEAEPNSEQVYQDICAALDMWLSIFV
PDSCSMDDEFKMVSGNTLPLLYNILDLLSVKGWTKLHSNIHQLIIRLYKQ
NNMQIGKCLANLWECRRLSHALCVSPVNEAFIATLSEHCGETSKSIDFWI
GCLSGSQPGLLGFQQNLICFFNTFTHRFKTHERDFKSAVPVNNVKQIVSE
LISSDPVRSHSLFLAGYLYYDLCERCVSSGQLFEGLSYAKEAFQLRSQLF
KRKFAFSIEEQVEKCNETGDIGEIALKVINGPKDLQVQRTVASELWSFDS
SSWDLCGCYLSPWNVLQCYLESILQVGYINEMTGNGVEAETFLVWGKSIS
CSQSLPLFEATFSSVLGKLYRKKQLWHFAEKELQSAKQILVGSSSYYSCI
KCRLMLEINLDQQLGDLFCNLFDSTIINNSKERLSHAEFLYKSALEKLNH
SEWKRISSDEENDENITIKTTTINSEDVAGNAANHPANQPEAVGARKSRK
TKNVSKSVLKEQYVIPEQSSRVTRSRFRSSQNQSLNSTGEAQVGLAKHSN
GNVVSKLCDTCSEKESLFEKGSCRDELRNETACICKRTKCWQCLPTEIMK
SGLLNYFINMKWEYAHRKLLVRVLTGIGKCLEYHGQTHELHKVVWQSISV
LVSRKRITQTCSSAHDTFLLDLIGREILGDVFAVERAAILYSIGWITVKN
IHSKDTRAVCCDLSNVQLSKTVHWLKLAFVLCREVPVLFQKVSRLLSAIY
LLSATTELFSLPSCKALSESHWASYFHQASLGTHLNYQFFPNTCGRPNAQ
CFVDSRDSHAIGSSCLHTETSTLLRLAPESVKDLEQFVMDFYACLPCTAI
ICISLLGHAYTSLLQELLLNPSCIHAWMLLSRLNSNNQPVVLLLPLDSVL
EEVSDDAAPDDDNARACQNLRQHMNSGKKWHCPWGSTVVDDVAPAFKGIL
EENFITTSNFLIEDTKSTRSLWWMIRKKVDQQLGKLLSNLEDSWLGPWRH
VLLGDCLDCKSLNMVHKKLVRDLKSKCKMDINESFLKLVLGGAKYDIEEA
CFSWQCLKEGCYIGRLEHPGEEICRSNGIDKVSALASQLIHEAVNELHLA
DTISREPIILVLDYDVQMLPWESIPILRQQEVYRMPSVGSISLTLERSWH
YQEQVGRNAAVFPLIDPLDAFYLLNPSGDLSSTQAEFENWFRDQNFEGKA
GTVPTAEELATALKSHDLFLYFGHGSGEQYLSRKEIQELDKCAATLLMGC
SSGSLVLNGCYMPRGISLSYLRAGSPVTIANLWEVTDKDIDRFGKAVLSA
WLSERLEPADCSQCDQLVKEFEAMKIRGRSKGTSRKKVASSNIDETSNGD
SLKNTCDHRPKIGSFVGRARETCTLPFLNGASPVCYGVPTGIRRKKDLSP
NS*
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