|
|
Properties
| Property Name | Value |
|---|
| Model evidence | Supporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns |
| Product | 30-kDa cleavage and polyadenylation specificity factor 30, transcript variant X2 |
| Note | 30-kDa cleavage and polyadenylation specificity factor 30 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc02v2_t001050.2 ID=Tc02v2_t001050.2|Name=Tc02v2_t001050.2|organism=Theobroma cacao|type=mRNA|length=2097bp
ATGGATGACTCGGAGGGAGGTCTCAGCTTCGATTTCGAGGGCGGTCTCGA
TGCGGGTCCCGCCGCGCCAACTGCCTCCATGCCCGTTGTCAACTCCGATC
CTTCGGCCGCCGCCAACAACAACAGCAACAACAACTCGGCGGTCCCAGGC
GCTGCCCCTACTTCGACAAATGATCCCGCCGCCGCTGTGGGTGGCGGAGG
AGCTGGGCGAAGGAGCTTTCGTCAGACTGTATGCCGGCACTGGCTCCGCA
GCCTCTGCATGAAGGGCGACGCCTGCGGTTTCCTTCACCAGTACGACAAG
TCCCGCATGCCGGTCTGCCGGTTTTTTCGGCTTTTTGGTGAGTGCCGGGA
GCAAGATTGTGTCTACAAACACACCAACGAGGATATTAAGGAGTGTAACA
TGTACAAGCTAGGTTTTTGTCCTAATGGTGCTGACTGCCGATATAGGCAT
GCAAAGCTCCCAGGACCTCCACCTCCTGTGGAAGAAGTCCTGCAAAAGAT
TCAGCAATTGAGTTCTTACAATTATAACAAATTTTTTCAACAAAGGAATT
CTGGCTTTGCCCAACAAACAGAAAAATCTCAGATTCCACAAGGACAAAAC
AATGTAAACCAAGGAGCAGGTGGAAAACCTTCAACAACAGAATCTGCTAA
CATGCATCCACAGCAGCAAGTTCAACAGCCTCCACAACAGGTCAGCCAGA
CCCAGATACAAAATGTCCCCAACGGTCAGTCTAACCAGGCAAACAAAACT
GCTATACCTTTGCCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTG
CAACCGCGAAAATCTGGAACTATCTGTTCAACAAGGAGTATGGGCAACTC
AAAGAAGCAATGAGGCTAAACTGAATGAAGCTTTTGATTCTGCTGAAAAT
GTGATTTTGATCTTCTCAGTTAATCGTACTCGGCATTTCCAGGGTTGTGC
CAAGATGACATCAAAAATTGGTGGATCTGTTGCTGGAGGGAACTGGAAAT
ATGCTCATGGAACTGCACATTATGGACGAAATTTCTCAGTAAAATGGTTA
AAATTATGTGAGCTGTCCTTCCACAAAACTCGCCATTTGAGGAACCCCTA
CAATGAGAACTTACCAGTAAAGATAAGTAGAGATTGTCAGGAGTTAGAGC
CTTCTATTGGTGAGCAGTTGGCCTCCTTGCTTTATCTTGAGCCAGATAGT
GAGCTTATGGCTATTTCGGTGGCAGCAGAATTAAAACGAGAAGAAGAGAA
AGCAAAGGGAGTCAATTCAGATAATGGAGGAGAGAACCCGGACATTGTGC
CATTTGAGGACAACGAAGAAGAAGAAGAGGAAGAAAGTGAGGAGGAGGAT
GAAAGCTTTAGTGCTGCAGCTCAGGGAAGAGGAAGAGGCAGAGGAGTCAT
GTGGCCCCCTCACATGCCACTTGCCCGAGGTGCCAGACCCATGCCTGGTA
TGCGAGGTTTTCCACCTATGATGATGGGTGGTGATGGCTTTTCGTATGGA
CCCGTAACACCTGATGGTTTTGGGGTGCCAGATCTTTTCGGTGCTCCCCG
TCCTTTTCCACCATATGGGCCAAGGTTTTCTGGAGATTTCACAGGTCCTG
CATCTGGCATGATGTTTCCAGGGCGACCTCCACAACCTGGGGCTATGTTT
CCTGCTGGTGGACTTGGGATGATGATGGGTCCAGGTCGTGCTCCATTTAT
GGGGGGTATGGGGCCCACAGGTGCAAATCCTGTTCGAGGTGGCCGCCCAG
TCAGCATGCCCCCTATGTTTCCCCCACCCCCAGCACCTTCATCCCAGAAT
TCTGGCCGGGCAGTTAAGAGAGATCAGAGGACACCAACCAATGACAGATA
TGGTGCAGGATCAGAGCAGGGTAGAGGTCAGGAAATGGCTGGTCCGGGAG
GCAGGTTGGATGATGAGACACAGTATCAGCAAGAAGGACAAAAGGCTCAC
CACGAAGATCAGTTTGCTGCTGGAAACAGCTTCAGAAATGATGAGAGTGA
AAGTGAGGATGAGGCACCGAGGAGGTCAAGGTATGGCGAAGGGAAGAAGA
AAAGAAGAAGCTTAGAAGGAGATGATGCCAATGGTTCTGATCACTAG back to topprotein sequence of Tc02v2_p001050.2 >Tc02v2_p001050.2 ID=Tc02v2_p001050.2|Name=Tc02v2_p001050.2|organism=Theobroma cacao|type=polypeptide|length=699bp
MDDSEGGLSFDFEGGLDAGPAAPTASMPVVNSDPSAAANNNSNNNSAVPG
AAPTSTNDPAAAVGGGGAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDK
SRMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGADCRYRH
AKLPGPPPPVEEVLQKIQQLSSYNYNKFFQQRNSGFAQQTEKSQIPQGQN
NVNQGAGGKPSTTESANMHPQQQVQQPPQQVSQTQIQNVPNGQSNQANKT
AIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN
VILIFSVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWL
KLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDS
ELMAISVAAELKREEEKAKGVNSDNGGENPDIVPFEDNEEEEEEESEEED
ESFSAAAQGRGRGRGVMWPPHMPLARGARPMPGMRGFPPMMMGGDGFSYG
PVTPDGFGVPDLFGAPRPFPPYGPRFSGDFTGPASGMMFPGRPPQPGAMF
PAGGLGMMMGPGRAPFMGGMGPTGANPVRGGRPVSMPPMFPPPPAPSSQN
SGRAVKRDQRTPTNDRYGAGSEQGRGQEMAGPGGRLDDETQYQQEGQKAH
HEDQFAAGNSFRNDESESEDEAPRRSRYGEGKKKRRSLEGDDANGSDH* back to top
|