Tc01v2_t031000.1

Overview
NameTc01v2_t031000.1
Unique NameTc01v2_t031000.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1452
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Producttwo-component response regulator ARR14
NoteResponse regulator 2, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614226
GenbankXM_018125394.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g031000Tc01v2_g031000Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p031000.1Tc01v2_p031000.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto69835auto69835Theobroma cacaoexon
exon-auto69836auto69836Theobroma cacaoexon
exon-auto69837auto69837Theobroma cacaoexon
exon-auto69838auto69838Theobroma cacaoexon
exon-auto69839auto69839Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto69840auto69840Theobroma cacaoCDS
CDS-auto69841auto69841Theobroma cacaoCDS
CDS-auto69842auto69842Theobroma cacaoCDS
CDS-auto69843auto69843Theobroma cacaoCDS
CDS-auto69844auto69844Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t031000.1 ID=Tc01v2_t031000.1|Name=Tc01v2_t031000.1|organism=Theobroma cacao|type=mRNA|length=1452bp
ATGAATAGCGAGATGGCTATCTCAGTTGAATCCAGCATAAATACTGCATG
TGCAGGTGTTACAGTTTTGCTTGTAGATGGTGATTCAACCTGTCTTACTA
TCGTATCAAAAATGCTTCGCAGGCTTGGGTATGAAGTCATGACTGCTAAA
CGAGCAACCGAGGCATTTTGCATCATACAAGAGAGGCAGTACGAAATTGA
CCTTATCCTTGCAGAAGGCTGCCTGCCTGATATGGATAAATATGAGCTAC
TTGAGACAATGAGGAAAATTTCTAAGCTTCCTGTTGTTCTCATGTCTATC
GATTACAATGGGAAAGCCGTACTAGGTAGCCTCTTTAAAGGAGCTGTATT
ATACCTTGTCAAACCAATCGCCATGGATGATCTTAAAAACCTATGGCAGT
TTGCATTTATTAAGGAAAGTAAAAATGTGGTAGCTGCAGAAGAGATATTT
GGTTTTGAGGAGGAATTATCACTGGAGAATGCATCAGATGTGACTGTAGA
GTCTCAACCACTTATAGGTGAAGGAGGGCAGAATTACCAAAATGAAAAAA
GAGAAAGATCAGATGATATGGAAAATAATGAGGAAGATAATGATGATTCA
GTAGCTCTAAAGAAGCCAAAGCTAATTTGGACTAATGAGCTACATAATAG
ATTCTTGGAAGCTATCAAAGTACTTGGTATTGATGGAGCTCATCCAAAGA
AAATACTTCAGCATATGAATGTCCCTGGACTAAAGAAAGAAAATGTTTCA
AGCCATTTACAGAAATATCGTCTCTCCTTGAAACGGGAACAATATGCAAT
TCAGAAGACCATGAGCAGAGGTTCCGCTGTAGAACATGTTGTATCCCATC
ATCTTTCGTCTCCATTCAGTCCACAAGAAGGGTCTGTTAAATTTGAAAAT
TGGCAATCCATGGCAGTAGCAGACCAACCAGATACCAATGGCCTAATTCA
GGAGAATCTTAATGGACACATGCCTATTCCTTCCCTTTGTTCTGCATATC
TTCTTAAGCATGCAAATTCAAATTGTAATGATGAATTGATGATTAAATTT
GAGCAACAGACTCCATGCAACAAACAGCTAGATTCTGCTCATTCTGAATT
TAATCTGACTGGTGACAGGGTCACCGTTAATGATGGACTGGTTGGTTTTC
ATCAGATAGGGAATTCAGAACAATTTCTGAAGGGAGGAACTGATCTTTTG
AACATTGGAGATTCTGGGCTGGAAAGTTTATTACATTGCCCAAAACCATT
TGATGGTTCTTTGCAAGAAAAACAACAGAAACAACTAAAATTTCTGCTTC
CAGAGCCATCACAACTGCCTCCTCACCCACAGGAGCAAGAGGAACATGAT
GTTTTTGGGGCTGAAAGAGGAAGAGAATTCAATGAGGTGTTTACCATGGG
AAAAAGAAAAAGTCAACTATCCTATGATGAGGATTCTGATGATTTCTGGT
AG
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protein sequence of Tc01v2_p031000.1

>Tc01v2_p031000.1 ID=Tc01v2_p031000.1|Name=Tc01v2_p031000.1|organism=Theobroma cacao|type=polypeptide|length=484bp
MNSEMAISVESSINTACAGVTVLLVDGDSTCLTIVSKMLRRLGYEVMTAK
RATEAFCIIQERQYEIDLILAEGCLPDMDKYELLETMRKISKLPVVLMSI
DYNGKAVLGSLFKGAVLYLVKPIAMDDLKNLWQFAFIKESKNVVAAEEIF
GFEEELSLENASDVTVESQPLIGEGGQNYQNEKRERSDDMENNEEDNDDS
VALKKPKLIWTNELHNRFLEAIKVLGIDGAHPKKILQHMNVPGLKKENVS
SHLQKYRLSLKREQYAIQKTMSRGSAVEHVVSHHLSSPFSPQEGSVKFEN
WQSMAVADQPDTNGLIQENLNGHMPIPSLCSAYLLKHANSNCNDELMIKF
EQQTPCNKQLDSAHSEFNLTGDRVTVNDGLVGFHQIGNSEQFLKGGTDLL
NIGDSGLESLLHCPKPFDGSLQEKQQKQLKFLLPEPSQLPPHPQEQEEHD
VFGAERGREFNEVFTMGKRKSQLSYDEDSDDFW*
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