Tc01v2_t029020.1

Overview
NameTc01v2_t029020.1
Unique NameTc01v2_t029020.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1758
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 14 ESTs, 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productjasmonic acid-amido synthetase JAR1
NoteJasmonic acid-amido synthetase JAR1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18614015
GenbankXM_018130000.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g029020Tc01v2_g029020Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p029020.1Tc01v2_p029020.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto65433auto65433Theobroma cacaoexon
exon-auto65434auto65434Theobroma cacaoexon
exon-auto65435auto65435Theobroma cacaoexon
exon-auto65436auto65436Theobroma cacaoexon
exon-auto65437auto65437Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto65438auto65438Theobroma cacaoCDS
CDS-auto65439auto65439Theobroma cacaoCDS
CDS-auto65440auto65440Theobroma cacaoCDS
CDS-auto65441auto65441Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t029020.1 ID=Tc01v2_t029020.1|Name=Tc01v2_t029020.1|organism=Theobroma cacao|type=mRNA|length=1758bp
ATGTTAGAAAAGATGGAAATTCTGGACGTTGAAATAGTGATTGAAGAGTT
CGAAGCGATGACCAAAGATGCTGGGAGCGTTCAAAGGGAGACTTTAAAGA
AGATTTTAGAAGAAAACGCATGCGCTGAGTATTTGCAGAATCTCGGCCTG
AATGGAAGAACTGATCCCGAGAGCTTCAAGGCTTGTGTTCCTCTCGTTAC
TCACAAGGACTTGGAGCCTTATATTCAAAGAATCACTGATGGTGATTCTT
CCCCGATTCTCACTGGAAAACCAATAACCACCATATCTCTCAGCTCTGGC
ACTACTCAAGGAAAGCCCAAGTTTGTGCCTTTCAATGATGAATTGATGGA
AACCACTTTGCAGATTTACCGTACCTCTTATGCTTTTAGAAACAGAGAAT
TCCCTGTTGGGAAGGGGAAGGCTTTGCAGTTCATTTACAGTAGCAAGCAG
AGTAAAACCAAAGGGGGTTTGTTTGCTGGAACTGCAACTACCAATGTCTT
TCGCAATTCGCAGTTTAAAAATGCGATGCAAGCAATCCAATCTCAGTGTT
GCAGCCCTGATGAGGTGATATTTGGTCCTGATTTCCACCAATCTTTGTAT
TGCCATCTTTTATGTGGGCTGATTTTCCGTGAGGAAATTCAGTTGGTTTC
CTCTACGTTTGCCCATAGCATTGTTCTTGCCTTTCGAACTTTTGAACAAG
TTTGGGAAGAGCTTTGTGCTGATATAAGAGAAGGGATCCTCTCTAGCAGG
ATCACTTTTCCCTCTGTCCGATCAGCTATGGCCAAATTGCTGAAGCCAAA
TCCTGAATTGGCTGATTTGATTCATAAGAAATGTACAGCACTAAGTAATT
GGTATGGATTGATACCGGAGCTTTTCCCTAATGTGAAATACATCTATGGA
ATCATGACTGGGTCCATGGAGCCTTATTTGAAAAAGTTAAGGCATTATGC
AGGGGATTTGCCTCTTTTAAGTGCTGATTATGGTTCTTCAGAAGGGTGGA
TTGGGGCCAATATCGATCCAAACCTGCCTCCTGAGTCGGCTTCTTATGCT
GTGCTTCCTAATATTGGGTATTTTGAATTCATCCCTCTGAATGAGAACGT
TGAGGAGCATGTGCAAGACAAAGTTAATGCTTCTTTCCTCTCTGCCGAGC
CCAAGCCAGTGGGTCTGACTGAAGTTAAGGTTGGCGAAGAGTATGAGATT
ATTATGACCAGTTTTGCAGGTTTGTACAGGTATAGGCTAGGGGATGTGGT
CAAGGTTATGGGCTTCCATAACTCAACCCCGGAACTGAAATTTGTCTGCA
GAAGAAACCTGATGCTCACCATAAACATCGACAAGAACACCGAGAAAGAT
TTGCAGCTCGCCGTGGAGGAAGCAGCCAAGTTAATTGCTGGAGAAAAGAT
GGAAGTTGTTGATTTCTCTAGTCATGTGGATGTGTCAACCGACCCCGGTC
ACTATGTGATCTTTTGGGAAATTAGTGGCGAAGTGAGCGATGAGGTCCTG
AAAGAATGCTGCAATTGTCTGGATCGTTCTTTTGTTGATGCAGGCTATAT
CAGTTCCCGCAAGGTCAATGCCATTGGGCCTCTTGAACTCCGAGTTGTTT
GGAGGGGAACTTTCCAGAAGATTCTTGATCATTACCTAGGATTAGGAGCT
GCTCTTAGTCAGTTCAAAACGCCACGATGCGTGGGGCCTACAAACAATAA
AGTGCTGCAAATCTTGTGCGGCAATGTCGCCAAGAGCTACTTCAGTACTG
CTTTCTAG
back to top

protein sequence of Tc01v2_p029020.1

>Tc01v2_p029020.1 ID=Tc01v2_p029020.1|Name=Tc01v2_p029020.1|organism=Theobroma cacao|type=polypeptide|length=586bp
MLEKMEILDVEIVIEEFEAMTKDAGSVQRETLKKILEENACAEYLQNLGL
NGRTDPESFKACVPLVTHKDLEPYIQRITDGDSSPILTGKPITTISLSSG
TTQGKPKFVPFNDELMETTLQIYRTSYAFRNREFPVGKGKALQFIYSSKQ
SKTKGGLFAGTATTNVFRNSQFKNAMQAIQSQCCSPDEVIFGPDFHQSLY
CHLLCGLIFREEIQLVSSTFAHSIVLAFRTFEQVWEELCADIREGILSSR
ITFPSVRSAMAKLLKPNPELADLIHKKCTALSNWYGLIPELFPNVKYIYG
IMTGSMEPYLKKLRHYAGDLPLLSADYGSSEGWIGANIDPNLPPESASYA
VLPNIGYFEFIPLNENVEEHVQDKVNASFLSAEPKPVGLTEVKVGEEYEI
IMTSFAGLYRYRLGDVVKVMGFHNSTPELKFVCRRNLMLTINIDKNTEKD
LQLAVEEAAKLIAGEKMEVVDFSSHVDVSTDPGHYVIFWEISGEVSDEVL
KECCNCLDRSFVDAGYISSRKVNAIGPLELRVVWRGTFQKILDHYLGLGA
ALSQFKTPRCVGPTNNKVLQILCGNVAKSYFSTAF*
back to top