Tc01v2_t027370.1

Overview
NameTc01v2_t027370.1
Unique NameTc01v2_t027370.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1293
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Productpectin acetylesterase 6, transcript variant X2
NotePectin acetylesterase 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613828
GenbankXM_018128045.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g027370Tc01v2_g027370Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p027370.1Tc01v2_p027370.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto61978auto61978Theobroma cacaoexon
exon-auto61979auto61979Theobroma cacaoexon
exon-auto61980auto61980Theobroma cacaoexon
exon-auto61981auto61981Theobroma cacaoexon
exon-auto61982auto61982Theobroma cacaoexon
exon-auto61983auto61983Theobroma cacaoexon
exon-auto61984auto61984Theobroma cacaoexon
exon-auto61985auto61985Theobroma cacaoexon
exon-auto61986auto61986Theobroma cacaoexon
exon-auto61987auto61987Theobroma cacaoexon
exon-auto61988auto61988Theobroma cacaoexon
exon-auto61989auto61989Theobroma cacaoexon
exon-auto61990auto61990Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto61991auto61991Theobroma cacaoCDS
CDS-auto61992auto61992Theobroma cacaoCDS
CDS-auto61993auto61993Theobroma cacaoCDS
CDS-auto61994auto61994Theobroma cacaoCDS
CDS-auto61995auto61995Theobroma cacaoCDS
CDS-auto61996auto61996Theobroma cacaoCDS
CDS-auto61997auto61997Theobroma cacaoCDS
CDS-auto61998auto61998Theobroma cacaoCDS
CDS-auto61999auto61999Theobroma cacaoCDS
CDS-auto62000auto62000Theobroma cacaoCDS
CDS-auto62001auto62001Theobroma cacaoCDS
CDS-auto62002auto62002Theobroma cacaoCDS
CDS-auto62003auto62003Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t027370.1 ID=Tc01v2_t027370.1|Name=Tc01v2_t027370.1|organism=Theobroma cacao|type=mRNA|length=1293bp
ATGAATCGGGTTTCGATATGGGTTTTGAGTCTGTGTTGTGTAGTTGGAAT
TGGTTTGAGCCGATCTGAAGATGCGGTTGAAGAATTGAAAGCTAAAGAGA
GTCTGCTTTCGTACTTGGAGAAAGATGCAGCGTCCCCTGGCGCCAACACT
CTCATGGTTCCCCTCACTCTCATTCAAGGAGCTGCTTCTAAAGGAGCTGT
TTGTTTGGATGGGACGCCTCCTGGTTATCATCTGGATCGTGGGTTCGGTT
CAGGTTCAAACGGCTGGCTCATTCATTTGGAGGGAGGTGGATGGTGTAAT
AACATTCGAACTTGTGTCTTCCGTAAAACTACTCGACGTGGTTCATCAAA
ATTTATGGCGAAGCAAACAAATTTCACCGGAATATTGAGCAATAAAGCTG
AAGAAAATCCTGATTTCTACAACTGGAACAGAGTGAAGCTACGGTACTGC
GATGGGGCATCGTTTGCTGGGGAGGGCCAGAATGAGGCTAACCAACTTTA
TTTTAGAGGACAAAGGATCTGGTCAGCTGCTATGGAAGAATTAATGGCCA
AGGGAATGCAGAATGCTGAGCAGGCTCTTCTTTCTGGATGCTCAGCTGGG
GGTCTAGCATCCATTCTACACTGTGATGAATTTAAGGATTTGTTTCCAAA
AACCACCAAAGTGAAATGTCTAAGCGATGCGGGAATGTTCCTTGATGCAA
CTAATGTGGCTGGTGGCCATTCATTAAGGGATATGTATGGGGGTGTGGTT
ACCTTACAGGGTGTGCAAAAGAATCTGCCAAACACTTGTACCAGTCAAAT
GGATCCAACTTCGTGCTTCTTCCCTCAAAACTTGGTTGCAAATATCAGGA
CTCCTTTGTTTCTTCTCAATGCAGCCTATGATGCATGGCAGGTCCAAGAG
AGTTTAATTCCATCATCTGCTGATCCTCATGGCTCCTGGCGTGAGTGCAA
AATGGATCGTTCCCATTGTAACTCAACACAAATGCAGTTTCTGCAAGACT
TCAGGAGTCAAATGCTCAACGCCATAAATGTTTTCTCAAAGTCCAATCAA
AATGGTTTATTCATAAATTCTTGTTTTGCTCACTGCCAGTCAGAGAGGCA
GGATACATGGTATGAGAATGATTCTCCCCGTATTGGAAACAAGGCAGTTG
CAGTGTCTGTTGGAGACTGGTTCTTTGATCGAACAGCTGTTAAAGCTATT
GACTGTGCATACCCATGTGACAGTACTTGTCACGATCTTGTCTTCAAAGA
GAGCATCCCTGATTTTCTAAACCGATATTGCTGGTGGAGGTAA
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protein sequence of Tc01v2_p027370.1

>Tc01v2_p027370.1 ID=Tc01v2_p027370.1|Name=Tc01v2_p027370.1|organism=Theobroma cacao|type=polypeptide|length=431bp
MNRVSIWVLSLCCVVGIGLSRSEDAVEELKAKESLLSYLEKDAASPGANT
LMVPLTLIQGAASKGAVCLDGTPPGYHLDRGFGSGSNGWLIHLEGGGWCN
NIRTCVFRKTTRRGSSKFMAKQTNFTGILSNKAEENPDFYNWNRVKLRYC
DGASFAGEGQNEANQLYFRGQRIWSAAMEELMAKGMQNAEQALLSGCSAG
GLASILHCDEFKDLFPKTTKVKCLSDAGMFLDATNVAGGHSLRDMYGGVV
TLQGVQKNLPNTCTSQMDPTSCFFPQNLVANIRTPLFLLNAAYDAWQVQE
SLIPSSADPHGSWRECKMDRSHCNSTQMQFLQDFRSQMLNAINVFSKSNQ
NGLFINSCFAHCQSERQDTWYENDSPRIGNKAVAVSVGDWFFDRTAVKAI
DCAYPCDSTCHDLVFKESIPDFLNRYCWWR*
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