Tc01v2_t024210.2

Overview
NameTc01v2_t024210.2
Unique NameTc01v2_t024210.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1986
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productauxin response factor 23, transcript variant X2
NoteAuxin response factor
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613466
GenbankXM_018114367.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g024210Tc01v2_g024210Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p024210.2Tc01v2_p024210.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto54155auto54155Theobroma cacaoexon
exon-auto54156auto54156Theobroma cacaoexon
exon-auto54157auto54157Theobroma cacaoexon
exon-auto54158auto54158Theobroma cacaoexon
exon-auto54159auto54159Theobroma cacaoexon
exon-auto54160auto54160Theobroma cacaoexon
exon-auto54161auto54161Theobroma cacaoexon
exon-auto54162auto54162Theobroma cacaoexon
exon-auto54163auto54163Theobroma cacaoexon
exon-auto54164auto54164Theobroma cacaoexon
exon-auto54165auto54165Theobroma cacaoexon
exon-auto54166auto54166Theobroma cacaoexon
exon-auto54167auto54167Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto54168auto54168Theobroma cacaoCDS
CDS-auto54169auto54169Theobroma cacaoCDS
CDS-auto54170auto54170Theobroma cacaoCDS
CDS-auto54171auto54171Theobroma cacaoCDS
CDS-auto54172auto54172Theobroma cacaoCDS
CDS-auto54173auto54173Theobroma cacaoCDS
CDS-auto54174auto54174Theobroma cacaoCDS
CDS-auto54175auto54175Theobroma cacaoCDS
CDS-auto54176auto54176Theobroma cacaoCDS
CDS-auto54177auto54177Theobroma cacaoCDS
CDS-auto54178auto54178Theobroma cacaoCDS
CDS-auto54179auto54179Theobroma cacaoCDS
CDS-auto54180auto54180Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t024210.2 ID=Tc01v2_t024210.2|Name=Tc01v2_t024210.2|organism=Theobroma cacao|type=mRNA|length=1986bp
ATGGCTTCCTTTCCAACTGGTTTTTCGGTTTTCCTTCTTGGGCTTTCCTT
TAAAGAGGTCGAGGCATATATGAATAAAGATGGGACAATGGAAATGCCCA
TCTATAATTTACCTTCTAAGATCCTCTGCAGGGTGGTGCACGTCCAGCTT
AAGGCTGAAACTGGCACAGATGAGGTCTTTGCACAAATTACTCTACTTCC
AGAGGCAGAGCAAGATGAGCTAAGTATGGAGCATAGAAATTATCAAGCCT
TACCTCGAGAAGCTCATCCACGGATCTTGAGCAAGAAACTCACTCCATCT
GACACAAACACACATGGTGGATTCTCTGTTCCAAAGCGACATGCTGATGA
TGGGTGTCTTCCGCCACTGGACATGTCTCAGCATACCCCACAGCAGGATT
TGGTCGCGATTGACTTGCATGGTTCTGAATGGCGGTTTCGTCATATTTTT
CGTGGTCAGCCAAAAAGGCACTTGCTTACCAGTGGTTGGAGTACATTCGT
GACATCAAAGAAGCTTGTTGCTGGGGATACATTTATCTTTCTTAGAGGGG
ATAATGGAGAGCTTCATGTTGGCGTTCACCGAGCAACAACACTAATGAAC
AATACATCAACATCTGTGATATCTGGTCACAGCATGAGACATGGTATACT
TGCTAGTGCTTTCCATGCCTTTTCTACCAGAAGCATGTTTACTATCTACT
ACCGCCCTTGGACAAGTTCTTCTGAATTCATCATCCCACTTGATCAGTAT
ATGAAGTCCGCTGAAATTGTTTACTCCATTGGGACAAGATTTAGGATGCA
ATCTGAAGGCAAAGAATGTGGGGAACAAAGAGCTCTTGGCACTATCATTG
GCACTGAAGATGTTGATCACATTAGGTGGCCAAATTCTGAATGGAGATGT
CTGAAGGTGAAATTGGATCCCACATCAGATGCAAATTTTCGCCCTGAAAG
AGTCTGTCCTTGGAACATTGAACCAATAGAATCCACTAACAGAAAGAAAC
CTTTCATTTTGCGTCAGCAAAAGAGGGCTCGTACTGATGATGCATCATCC
CCTGGGTTTTCTAGCTTGCTTATGGATGGCATGTGGTGTGGCTCAGTTAA
ATATGAATCTCAAAGTAGCTCAGGGGTCTTGCAAGGTCAAGAAGATGACA
CAGATGTGAATCAATCCAGTGCGCTAAGACAACCATTGCCACATTTGGTT
CTCCCACTACATCCTGATTGTGCCTCAATGCAACCGCAGATGGAGAATCA
ACTAGAGATTCAGGTTCCGATCTGCAACTCATTTTATCAATGTACCAGCA
GCAGAGCACTTTATTCTGGTGGCAAAGTAGCTTGTTTGGGTCTTCATAAT
AACTGGTCTCCAACATTCTCCTCTTATGGAGTTGATGACGATGCTCTTGC
TAGGAGAAAATTTTCAGTTCCATATGTCAATTCTCAGGAATCGAGAACTT
TGGAACTAAGGAATGAAAATGAAACTTCACTTTGTGAACCGACCGGTGGT
CACAGATGCATGATTTTTGGAGTAAATTTAGTTAATGGTCCACCGGAGCT
CCCTTCACGACAAGTTCTCACTTCTAGTGAGCTTAAACGTCTTTGTTCTA
TTCCTCCAACGTCTCAGTCAAGTGTTTCAGAACCTTCTAAGGTTACATCT
AGCAAGCAGTGCAACAACAGTTGCTCTGTCAGCAACCGGAGTTGCACCAA
GGTGCTCAAGTATGGGACTGCACTTGGAAGATCAGTTGATCTCACTCGAT
TTAATGGATATGAAAACCTCATCAGTGAGCTTGATCGAATGTTTGATTTT
AAAGGAAGATTGATCAATGGAAGCAGTGGCTGGCATGTAACTTATACTGA
TGATGAGGGGGACATGATGCTTCTTGGAGATTACCCATGGCAGAAATTTC
AGTACGAGGTCCGAAGGATTGTCATCTGCCCAATGGAAGAAATTGACAGA
CTGAATCAAAGCTCACCAAATTCAACATCTCAATGA
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protein sequence of Tc01v2_p024210.2

>Tc01v2_p024210.2 ID=Tc01v2_p024210.2|Name=Tc01v2_p024210.2|organism=Theobroma cacao|type=polypeptide|length=662bp
MASFPTGFSVFLLGLSFKEVEAYMNKDGTMEMPIYNLPSKILCRVVHVQL
KAETGTDEVFAQITLLPEAEQDELSMEHRNYQALPREAHPRILSKKLTPS
DTNTHGGFSVPKRHADDGCLPPLDMSQHTPQQDLVAIDLHGSEWRFRHIF
RGQPKRHLLTSGWSTFVTSKKLVAGDTFIFLRGDNGELHVGVHRATTLMN
NTSTSVISGHSMRHGILASAFHAFSTRSMFTIYYRPWTSSSEFIIPLDQY
MKSAEIVYSIGTRFRMQSEGKECGEQRALGTIIGTEDVDHIRWPNSEWRC
LKVKLDPTSDANFRPERVCPWNIEPIESTNRKKPFILRQQKRARTDDASS
PGFSSLLMDGMWCGSVKYESQSSSGVLQGQEDDTDVNQSSALRQPLPHLV
LPLHPDCASMQPQMENQLEIQVPICNSFYQCTSSRALYSGGKVACLGLHN
NWSPTFSSYGVDDDALARRKFSVPYVNSQESRTLELRNENETSLCEPTGG
HRCMIFGVNLVNGPPELPSRQVLTSSELKRLCSIPPTSQSSVSEPSKVTS
SKQCNNSCSVSNRSCTKVLKYGTALGRSVDLTRFNGYENLISELDRMFDF
KGRLINGSSGWHVTYTDDEGDMMLLGDYPWQKFQYEVRRIVICPMEEIDR
LNQSSPNSTSQ*
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