Tc01v2_t023940.1

Overview
NameTc01v2_t023940.1
Unique NameTc01v2_t023940.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1035
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 21 ESTs, 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productgibberellin receptor GID1B
NoteGibberellin receptor GID1B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613439
GenbankXM_007050672.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g023940Tc01v2_g023940Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p023940.1Tc01v2_p023940.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto53612auto53612Theobroma cacaoexon
exon-auto53613auto53613Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto53614auto53614Theobroma cacaoCDS
CDS-auto53615auto53615Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t023940.1 ID=Tc01v2_t023940.1|Name=Tc01v2_t023940.1|organism=Theobroma cacao|type=mRNA|length=1035bp
ATGGCCGGTAGCAATGAAGTCAACCTCAATGAATCCAGGAGGGTTGTTCC
GTTGAATACATGGGTCCTCATATCCAATTTCAAGCTAGCATACAATCTAC
AGCGCCGTCCAGATGGAACCTTTAACAGAGACTTATCGGAGTTCCTTGAC
CGCAAAGTCCCTGCCAATATCAACCCGGTTGATGGGGTTTTCTCCTTCGA
TCATGTTGATGGAGGCACCGGCCTTCTTAACAGGGTCTATCAGCCATCTT
CTCAGAATGAGGCTCAATGGGGCATTGTGGACCTTGAAAAACCTTTGAGC
ACCACGGAGATCGTTCCAGTCATAGTCTTCTTCCATGGTGGAAGCTTCAC
TCATTCTTCTGCCAATAGTGCTATCTACGACACTTTTTGTCGCCGCGTTG
TTAGCTTTTGTAAAGCCGTTGTGGTCTCTGTGAATTATCGCCGATCACCT
GAACATAGATATCCTTGTGCATACGATGATGGTTGGGCTGCTCTTAAGTG
GGTTAAATCAAGAACTTGGCTTCAAAGTGGGAAGGATTCTAAAGTCTATG
TTTATTTGGCTGGAGATAGTTCTGGTGGAAATATAGCTCACCATGTAGCC
GTGAGAGCAGCAGAAGCAGATGTTGAGGTATTAGGTAACATTCTTCTCCA
TCCAATGTTTGGTGGGCAGAGGAGAACAGAATCAGAAAAGAGATTGGATG
GGAAGTATTTTGTCACACTGCTGGACCGTGACTGGTATTGGCGAGCTTAT
TTACCTGAAGGGGAAGATAGAGACCATCCGGCTTGTAATCCCTTCGGCCC
TAGGGGCAAAAGCCTTAAAGGACTCAAGTTTCCCAAAAGTCTTCTTGTTG
TGGCTGGTTTGGATCTAATTCAAGATTGGCAATTGGCATACGTTGAAGGG
CTTAGAAGATCTGGTCAAGAAGTAAAACTTCTTTTTCTAGAGAAGGCCAC
AATCGGGTTCTACTTTTTGCCAAATAACGATCACTTCTATTGCCTCATGG
AGGAGATAAAGAACTTCGTCACTTCTAACTGTTAA
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protein sequence of Tc01v2_p023940.1

>Tc01v2_p023940.1 ID=Tc01v2_p023940.1|Name=Tc01v2_p023940.1|organism=Theobroma cacao|type=polypeptide|length=345bp
MAGSNEVNLNESRRVVPLNTWVLISNFKLAYNLQRRPDGTFNRDLSEFLD
RKVPANINPVDGVFSFDHVDGGTGLLNRVYQPSSQNEAQWGIVDLEKPLS
TTEIVPVIVFFHGGSFTHSSANSAIYDTFCRRVVSFCKAVVVSVNYRRSP
EHRYPCAYDDGWAALKWVKSRTWLQSGKDSKVYVYLAGDSSGGNIAHHVA
VRAAEADVEVLGNILLHPMFGGQRRTESEKRLDGKYFVTLLDRDWYWRAY
LPEGEDRDHPACNPFGPRGKSLKGLKFPKSLLVVAGLDLIQDWQLAYVEG
LRRSGQEVKLLFLEKATIGFYFLPNNDHFYCLMEEIKNFVTSNC*
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