Tc01v2_t022290.2

Overview
NameTc01v2_t022290.2
Unique NameTc01v2_t022290.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length939
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 15 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producttryptophan synthase alpha chain, transcript variant X1
NoteTryptophan synthase alpha chain
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613241
GenbankXM_007050368.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g022290Tc01v2_g022290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p022290.2Tc01v2_p022290.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto49600auto49600Theobroma cacaoexon
exon-auto49601auto49601Theobroma cacaoexon
exon-auto49602auto49602Theobroma cacaoexon
exon-auto49603auto49603Theobroma cacaoexon
exon-auto49604auto49604Theobroma cacaoexon
exon-auto49605auto49605Theobroma cacaoexon
exon-auto49606auto49606Theobroma cacaoexon
exon-auto49607auto49607Theobroma cacaoexon
exon-auto49608auto49608Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto49609auto49609Theobroma cacaoCDS
CDS-auto49610auto49610Theobroma cacaoCDS
CDS-auto49611auto49611Theobroma cacaoCDS
CDS-auto49612auto49612Theobroma cacaoCDS
CDS-auto49613auto49613Theobroma cacaoCDS
CDS-auto49614auto49614Theobroma cacaoCDS
CDS-auto49615auto49615Theobroma cacaoCDS
CDS-auto49616auto49616Theobroma cacaoCDS
CDS-auto49617auto49617Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t022290.2 ID=Tc01v2_t022290.2|Name=Tc01v2_t022290.2|organism=Theobroma cacao|type=mRNA|length=939bp
ATGGCTATTGCTCTGAAATCAACGGCCGACTTTCTCCACTTAAAGAAGCA
CAATCTCGCTTCACTATCTCGCCTTTCCTCCGGCAAGGCCTTTGTTTCAA
CCAAGAGATTCACTCCAATGGCTACTGTAACCACTGCTACAACTCTTGGC
CTTGCTGACACTTTCTCTAAATTGAAAACACAAGGCAAAGTTGCATTAAT
CCCATACATCACAGCTGGTGATCCTGATCTTTCAACAACAACTGAGGCAC
TTAAGGTGCTTGACTTATGTGGCGCAGACATAATTGAACTAGGTGTACCA
TATTCTGATCCTCTAGCTGATGGTCCTGTAATCCAGGCTGCGGCTACGCG
TTCTTTGGCAAGAGGAACCAACTTCAATGCTATTCTTTCAATGTTGAAGG
AGGTGGTTCCAGAGTTATCTTGTCCAATTGCTTTATTTACGTATTACAAC
CCAATTCTCAAGCGTGGGGTTGAGAAGTTTTTGTCCACTGTAAAGGATGT
AGGCATACATGGGCTTGTGGTTCCAGATGTTCCTTTGGAGGAGACTGAAA
TTTTGAGAAGAGAAGCTCTCAAAAACAAGATCGAATTGGTACTGCTTACA
ACACCGACTACACCAATAGACCGAATGAAAGCTATTGTCGAAGCATCAGA
AGGATTCGTGTATCTTGTGAGCTCAATTGGAGTTACTGGTGCCCGTGCAT
CTGTAAGTGATCGGGTTCAGACTCTTATTGGAGAAATTAAAGAGGCAACA
ACCAAGCCTGTTGCAGTAGGGTTTGGCATATCAAAACCTGAGCATGTGAA
GCAGGTAGCAGGATGGGGAGCGGATGGTGTGATTGTTGGCAGTGCCATGG
TCAAGCTGCTGGGTGAAGCAGAATCTCCCGAGGACGGATTGAAGGCGCTG
GAAATTTTTACCAAATCTTTGAAATCTGCACTTGCTTGA
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protein sequence of Tc01v2_p022290.2

>Tc01v2_p022290.2 ID=Tc01v2_p022290.2|Name=Tc01v2_p022290.2|organism=Theobroma cacao|type=polypeptide|length=313bp
MAIALKSTADFLHLKKHNLASLSRLSSGKAFVSTKRFTPMATVTTATTLG
LADTFSKLKTQGKVALIPYITAGDPDLSTTTEALKVLDLCGADIIELGVP
YSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPELSCPIALFTYYN
PILKRGVEKFLSTVKDVGIHGLVVPDVPLEETEILRREALKNKIELVLLT
TPTTPIDRMKAIVEASEGFVYLVSSIGVTGARASVSDRVQTLIGEIKEAT
TKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKLLGEAESPEDGLKAL
EIFTKSLKSALA*
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