Tc01v2_t020480.1

Overview
NameTc01v2_t020480.1
Unique NameTc01v2_t020480.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length426
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 18 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphotosystem I reaction center subunit IV A, chloroplastic
NotePhotosystem I reaction center subunit IV A, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18613008
GenbankXM_007050015.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g020480Tc01v2_g020480Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p020480.1Tc01v2_p020480.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto45484auto45484Theobroma cacaoexon
exon-auto45485auto45485Theobroma cacaoexon
exon-auto45486auto45486Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto45487auto45487Theobroma cacaoCDS
CDS-auto45488auto45488Theobroma cacaoCDS
CDS-auto45489auto45489Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t020480.1 ID=Tc01v2_t020480.1|Name=Tc01v2_t020480.1|organism=Theobroma cacao|type=mRNA|length=426bp
ATGGCTAGCTGCAGCATGGCGTCAGCTGCTTCAGGGTTCTTGCTGACACC
CAATGTGACAGGGAATGCAAGCTCAGCTTCTAAGACCAGCATGGCGTTTT
TCCCTTCAAAGAACAGCAACAACAACAGTAACAGTTCAAGGCTTGTTGTG
AGGGCAGCTGAAGAGGCTGCAGCACCAGCTCCAGCTACCACCACTGCACC
ACCAGAAGCCCCCAAGCCTAAGCCAGCGCCAATTGGACCAAAAAGAGGCA
CCAAGGTCAAGATTCTCAGAAGGGAGTCCTACTGGTACAACAGCTATGGA
TCAGTTGTTACAGTTGACCAGGACCCTAAGACTCGCTACCCAGTTGTGGT
TCGATTCAACAAAGTGAATTACGCCAATGTATCTACCAACAACTACGCAT
TGGATGAGATTGAAGAAGTTAAATGA
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protein sequence of Tc01v2_p020480.1

>Tc01v2_p020480.1 ID=Tc01v2_p020480.1|Name=Tc01v2_p020480.1|organism=Theobroma cacao|type=polypeptide|length=142bp
MASCSMASAASGFLLTPNVTGNASSASKTSMAFFPSKNSNNNSNSSRLVV
RAAEEAAAPAPATTTAPPEAPKPKPAPIGPKRGTKVKILRRESYWYNSYG
SVVTVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIEEVK*
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