Tc01v2_t019300.3

Overview
NameTc01v2_t019300.3
Unique NameTc01v2_t019300.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1683
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Producttranscription factor PIF1, transcript variant X1
NotePutative Transcription factor PIF1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612859
GenbankXM_018128109.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g019300Tc01v2_g019300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p019300.3Tc01v2_p019300.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto43734auto43734Theobroma cacaoexon
exon-auto43735auto43735Theobroma cacaoexon
exon-auto43736auto43736Theobroma cacaoexon
exon-auto43737auto43737Theobroma cacaoexon
exon-auto43738auto43738Theobroma cacaoexon
exon-auto43739auto43739Theobroma cacaoexon
exon-auto43740auto43740Theobroma cacaoexon
exon-auto43741auto43741Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto43742auto43742Theobroma cacaoCDS
CDS-auto43743auto43743Theobroma cacaoCDS
CDS-auto43744auto43744Theobroma cacaoCDS
CDS-auto43745auto43745Theobroma cacaoCDS
CDS-auto43746auto43746Theobroma cacaoCDS
CDS-auto43747auto43747Theobroma cacaoCDS
CDS-auto43748auto43748Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t019300.3 ID=Tc01v2_t019300.3|Name=Tc01v2_t019300.3|organism=Theobroma cacao|type=mRNA|length=1683bp
ATGAATCACTGCGTTCCCGATTTCGAAATGGGAGACGATTATTCAATCCC
TTCTTCTTCTAGCTTAACTCGCTCCAAAAAACCTCCCATGCCAGAGGATG
AAATCATGGAGCTGTTATGGCAAAACGGTCAAGTTGTTGTGCAGAGTCAA
AACCAAAGATCTTTCAAGAAATCACCGCCGTTCAAATTCCACGACGCCGA
TCAATCAGCTCCGAAGGAGATCCGATCATCTCCATCTCATCATCAACATC
ATCAGCAACAGCAGCAACAATCGGTTACCGATCATCTCTTCATGCAAGAA
GATGAAATGGCTTCATGGCTTCACTATCCTCTCAACGACGCCAACTTCGA
CCACGATTTCTGCGCTGATCTCCTCTATCCTTCTTCTTCCGCCGCCGCCG
CCGCTAATCCTTGCGTCACCTCCACCGCCACCGCCGCTCCTCCTCCACTC
GGAAGAGTTTCTCAAGTTTCGGCTTCGGCGGCGGCGTCAGCTCCTCGGCC
GCCGATACCACCGGCGAGGAGGAATGAGTTGGAGTCGACGAGGATCCAGA
ACTTCGTTCACTTCTCGAGGCATAAAACAGCGAGGGTGGAGCAATCTGGA
CCGTCTAATTCGAAGAGTGTAGTGAGGGAATCGACGGTCGTTGACTCGAG
CGAGACTCCGGCGATGGCCCCCGATTCGAGAGGCTCTCAGGCTGTGCCTA
GCAACACCGAGGCAGCATCTGGCGGGAACAACAACAATGCATCCGCCACC
GTGAGCGCCGCTGCAGTTGCCAGCACGCAATCAGCTGGCGTCAGTGTAGA
TGCCACCAAAGACAATTTGGCCACGTGCGAGGTCACAGTAACGTCATCTC
CTGGCGGCTCCAGTGCCAGCGCGGAGCCGGCGACTCAGAAGGCTGCGCCG
GCTGAGGACCGGAAGCGTAAAGGAAGAGAACCGGACGACGCCGAATGTCA
CAGCGAGGATGCTGAGTTTGAATCCGCTGACACAAAGAAACAAACACGTG
GATCCACATCTACAAAAAGGTCTCGTGCTGCGGAGGTCCATAACCTCTCA
GAGAGGAGGCGCAGAGATAGGATAAATGAAAAGATGAGGGCTTTGCAAGA
ACTTATACCTCGTTGCAACAAGTCAGACAAAGCTTCAATGCTGGATGAAG
CAATTGAATACCTGAAGTCACTTCAGTTGCAAGTTCAGATGATGTCCATG
GGTTGTGGCATGGTCCCAGTGATGTTTCCTGGAGTTCAGCAGTACATGCC
AACAATGGGAATGGGAATTGGGATGGGCATGGGCATGGGCATGGATATGG
GAATAAGTCGGCCAATGATGCCATTTCCCAATGTTTTGGCCGGTTCAGCA
TTACCAACACCAGCTGCTGCAGCTCATTTGGGTCCAAGGTTTCCTCTGCC
AGCCTTTCATATGCCACTACCAGTTCCAGCTCCTGATCCATCAAGAATCC
AACCAAACAATCAGTCAGAAGCCATGCTAAACACGCTTGGCATGCAAAAT
CCAACCCAGCCGCGGGCCCCAAATTTTGCTGATCCTTATCAGCAATATCT
TGGTCTTCAACAGATGCAATTACCCCCACTCCAGAGTCAAGGAATGGCCC
AGCCAAGTTCCCGTAAACCAAGTAGCAGTAGGGGAGCTGAGAATCTTAAA
AATCACCCATCTGGTAGGTCCATTACTTTCTAG
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protein sequence of Tc01v2_p019300.3

>Tc01v2_p019300.3 ID=Tc01v2_p019300.3|Name=Tc01v2_p019300.3|organism=Theobroma cacao|type=polypeptide|length=561bp
MNHCVPDFEMGDDYSIPSSSSLTRSKKPPMPEDEIMELLWQNGQVVVQSQ
NQRSFKKSPPFKFHDADQSAPKEIRSSPSHHQHHQQQQQQSVTDHLFMQE
DEMASWLHYPLNDANFDHDFCADLLYPSSSAAAAANPCVTSTATAAPPPL
GRVSQVSASAAASAPRPPIPPARRNELESTRIQNFVHFSRHKTARVEQSG
PSNSKSVVRESTVVDSSETPAMAPDSRGSQAVPSNTEAASGGNNNNASAT
VSAAAVASTQSAGVSVDATKDNLATCEVTVTSSPGGSSASAEPATQKAAP
AEDRKRKGREPDDAECHSEDAEFESADTKKQTRGSTSTKRSRAAEVHNLS
ERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSM
GCGMVPVMFPGVQQYMPTMGMGIGMGMGMGMDMGISRPMMPFPNVLAGSA
LPTPAAAAHLGPRFPLPAFHMPLPVPAPDPSRIQPNNQSEAMLNTLGMQN
PTQPRAPNFADPYQQYLGLQQMQLPPLQSQGMAQPSSRKPSSSRGAENLK
NHPSGRSITF*
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