Tc01v2_t017400.1

Overview
NameTc01v2_t017400.1
Unique NameTc01v2_t017400.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length657
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphotosystem I reaction center subunit XI, chloroplastic
NotePhotosystem I reaction center subunit XI, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612600
GenbankXM_007049482.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g017400Tc01v2_g017400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p017400.1Tc01v2_p017400.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto39793auto39793Theobroma cacaoexon
exon-auto39794auto39794Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto39795auto39795Theobroma cacaoCDS
CDS-auto39796auto39796Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t017400.1 ID=Tc01v2_t017400.1|Name=Tc01v2_t017400.1|organism=Theobroma cacao|type=mRNA|length=657bp
ATGGCTGCCACTGCTTCTCCAATGGCGAGTCAGCTCAAGAGCAGCTTTAC
ATCTTCTGTTACAAGAGGCCTGGTAGTCCCCAGGGGCATTTCTGGAGCCC
CATTCAGAGTATCACCCGGCAAGAGGACTCCTTGCTTCTCTGTTAAAGCT
GTCCAAGCAGACAAGCCAACATATCAAGTGATTCAACCCATCAACGGTGA
CCCCTTTATTGGAAGCCTTGAGACTCCGATTACATCAAGCCCCTTGATCG
CTTGGTACCTGTCCAACCTCCCAGCCTACAGGACGGCTGTGAACCCACTC
CTCAGGGGTATCGAGGTGGGTCTGGCCCACGGCTTCCTCCTGGTCGGTCC
ATTCGTTATAACTGGCCCTCTAAGGAACACACCTGTTGCAGGTCAAGCTG
GGTCCCTGGCAGCTGCTGGTCTTGTTGTGATCCTCAGCATTTGCTTGACA
ATGTATGGCACTGCATCATTCAATGAAGGAGAGCCCTCAACAGCCCCGAG
CCTAACCCTGACGGGAAGGAAGAAGGAGCCTGACCAGCTGCAAACTGCGG
ATGGATGGGCTAAGTTCAGCGGAGGATTCTTCTTTGGTGGAATCTCCGGT
GTCGCTTGGGCTTACTTCCTTCTCTACGTCCTTGACCTTCCTTACTACTT
CAAGTAG
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protein sequence of Tc01v2_p017400.1

>Tc01v2_p017400.1 ID=Tc01v2_p017400.1|Name=Tc01v2_p017400.1|organism=Theobroma cacao|type=polypeptide|length=219bp
MAATASPMASQLKSSFTSSVTRGLVVPRGISGAPFRVSPGKRTPCFSVKA
VQADKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVNPL
LRGIEVGLAHGFLLVGPFVITGPLRNTPVAGQAGSLAAAGLVVILSICLT
MYGTASFNEGEPSTAPSLTLTGRKKEPDQLQTADGWAKFSGGFFFGGISG
VAWAYFLLYVLDLPYYFK*
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