Tc01v2_t016510.1

Overview
NameTc01v2_t016510.1
Unique NameTc01v2_t016510.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1143
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productindole-3-glycerol phosphate synthase, chloroplastic
NoteIndole-3-glycerol phosphate synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612498
GenbankXM_018124411.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g016510Tc01v2_g016510Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p016510.1Tc01v2_p016510.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto37633auto37633Theobroma cacaoexon
exon-auto37634auto37634Theobroma cacaoexon
exon-auto37635auto37635Theobroma cacaoexon
exon-auto37636auto37636Theobroma cacaoexon
exon-auto37637auto37637Theobroma cacaoexon
exon-auto37638auto37638Theobroma cacaoexon
exon-auto37639auto37639Theobroma cacaoexon
exon-auto37640auto37640Theobroma cacaoexon
exon-auto37641auto37641Theobroma cacaoexon
exon-auto37642auto37642Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto37643auto37643Theobroma cacaoCDS
CDS-auto37644auto37644Theobroma cacaoCDS
CDS-auto37645auto37645Theobroma cacaoCDS
CDS-auto37646auto37646Theobroma cacaoCDS
CDS-auto37647auto37647Theobroma cacaoCDS
CDS-auto37648auto37648Theobroma cacaoCDS
CDS-auto37649auto37649Theobroma cacaoCDS
CDS-auto37650auto37650Theobroma cacaoCDS
CDS-auto37651auto37651Theobroma cacaoCDS
CDS-auto37652auto37652Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t016510.1 ID=Tc01v2_t016510.1|Name=Tc01v2_t016510.1|organism=Theobroma cacao|type=mRNA|length=1143bp
ATGGAGGGATTGGTTTTCCTGAAAGCGACTTCTAGAATTCCCTTTCAATC
AGTTCCTTCCTTCAATCACCGTCCTAATCTCATCATCCACCGCTCCAATT
TTCCGGGCATTCGAGCCCAACAGTCGGAGGCCATATCCCCGAAAAGGGGA
GAGGAGGAAGATGCGTTGAAAGTGAAGGAATGGGAAGTTGGAATGTTCCA
AAACGAAGTCGCTGCGAGTCAAGGTATAAGAATACGGCGAAGACCACCTT
CGGGTCCGCCGATGCATTACGTGGGCCCCTTCGAGTTCCGTTTGCAAAAC
GAGGGTAACACTCCTCGCAATATTCTCGAAGAAATCATTTGGCACAAAGA
CGTGGAAGTTTCCCAAATGAAAGAGAAGAAACCTCTGGCATCATTGAAGA
AGTTTATCGAGAATGCAGCTCCCACTAGAGACTTCGTCGGAGCTCTTAAA
GCGGCGCATTCACGGACTGGGTTGCCTGGTTTGATTGCTGAAGTTAAGAA
GGCTTCGCCTACCAGAGGAATTCTCAGAGAGGATTTTGATCCAGTTGAGA
TTGCTAGGGCATATGAGAAGGGTGGAGCCGCATGCCTTAGTGTTTTGACT
GATGAAAAGTATTTTAAGGGAAGCTTTGAAAATTTGGAGGCAATAAGGAG
TGCTGGAGTAAAGTGCCCTCTACTTTGCAAAGAATTTGTGATAGATGCAT
GGCAGATATATTATGCTCGAATTAAGGGAGCAGATGGAATACGTTTAATT
GCTGCTGTTTTGCCTGATCTTGACATCAGATACATGGTTAAAATCTGCAA
GATGCTTGGTTTGGCAGCGCTTGTAGAGGTGCACGATGAGAGGGAAATGG
ATCGCGTTCTTGGTATCGAAGGGATTGAACTTATTGGCATCAATAATCGT
AACCTCAAGACATTTGAGCTAGATATCAGTAACACAAAGAAGCTTCTTGA
AGGAGAGCGTGGCAAAATGGTCCGTCAGAAAGATATAATAGTCGTAGGGG
AATCTGGGCTGTTTACTCCAGATCATGTTGCTTATGTACAAGAAGCTGGT
GTTAAAGCTGTTTTGGTTGGGGAGTCAATAGTGACGCAAAGAGACCTTGG
AAAGGGAATAACTAGGCTTTTTGGTAAAGACATTTCTTTGTGA
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protein sequence of Tc01v2_p016510.1

>Tc01v2_p016510.1 ID=Tc01v2_p016510.1|Name=Tc01v2_p016510.1|organism=Theobroma cacao|type=polypeptide|length=381bp
MEGLVFLKATSRIPFQSVPSFNHRPNLIIHRSNFPGIRAQQSEAISPKRG
EEEDALKVKEWEVGMFQNEVAASQGIRIRRRPPSGPPMHYVGPFEFRLQN
EGNTPRNILEEIIWHKDVEVSQMKEKKPLASLKKFIENAAPTRDFVGALK
AAHSRTGLPGLIAEVKKASPTRGILREDFDPVEIARAYEKGGAACLSVLT
DEKYFKGSFENLEAIRSAGVKCPLLCKEFVIDAWQIYYARIKGADGIRLI
AAVLPDLDIRYMVKICKMLGLAALVEVHDEREMDRVLGIEGIELIGINNR
NLKTFELDISNTKKLLEGERGKMVRQKDIIVVGESGLFTPDHVAYVQEAG
VKAVLVGESIVTQRDLGKGITRLFGKDISL*
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