Tc01v2_t014100.1

Overview
NameTc01v2_t014100.1
Unique NameTc01v2_t014100.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1752
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productregulatory protein NPR3
NoteRegulatory protein NPR3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612208
GenbankXM_007048874.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g014100Tc01v2_g014100Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p014100.1Tc01v2_p014100.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto31468auto31468Theobroma cacaoexon
exon-auto31469auto31469Theobroma cacaoexon
exon-auto31470auto31470Theobroma cacaoexon
exon-auto31471auto31471Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto31472auto31472Theobroma cacaoCDS
CDS-auto31473auto31473Theobroma cacaoCDS
CDS-auto31474auto31474Theobroma cacaoCDS
CDS-auto31475auto31475Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t014100.1 ID=Tc01v2_t014100.1|Name=Tc01v2_t014100.1|organism=Theobroma cacao|type=mRNA|length=1752bp
ATGGAATATGGGAATGAAATTTCATCACCATTAAGCTTTGCCCCATCCTC
TTACTTATCGGATGGGTCTGGTGGTCACCTTATAGAAGCTGCCACAAGTA
CGGAAGACCCTGGGGCCAATCTTGAAATTCTGAGCCTGAGCAGGCTCAGC
TGCAGTCTTGAAAAGTTGTTGGTCGATCAGGAATATGATTACAGCGATGC
TGAGATAGTCGTGGAGGGCAACATTGCTGTGGGGGTGAATAGGTGCATAT
TGGCTGCGCGGAGCCAGTACTTCCATGAGCTTTTCAGGAAAGGGAGAGAT
GACAATTCCATGAATAAGGAAGGCAAACCACAGTATCTGATGTCAGAGCT
AGTGCCTCATGGTCGGGTGGGGTATGAAGCCTTCAAAGTTTTCTTGAACT
ATTTATATACTGGAAAGGTTAAGCCGTCACCTAGGGAAGTCTCAACCTGT
ATGGACGATGCTTGTGCCCATGATGCCTGTGGTCCTCTGATTACTTATGC
TTTGGAGTTGATGTATGCTTCTGCCACATTTCAGATGAAAGAGCTGGTTT
TGCTTGTTCAGCGCCATCTTTTGAACTCTGTCGGGAAGGCACTTGTGGAA
GATGTAATCCCAATTCTTGTGGCCGCTTTTCACTATAAACTTAACCCGCT
TCTATATGACTGCATCCAAAGAGTGGCAACATCGGGTCTCGATGATGCAT
GTTTAGAGAAAGAACTTCCTGGGGAAGTTTATCACGAGATCAGATCAGTC
CGTCTCAAATCTCATAAGCAAGAGGCTGAGCCAGGTGCAGTGGAGCTAGA
CCCAATGCTTGAAAAGAGAATCAGGAGAATTCACAAGGCATTGGACTCTG
ACGATGTTGAACTGCTCAGGCTTCTTCTGACGGAATCCAATGTCACATTA
GATGATGCATATGCACTCCACTATGCTGCTGCCTACTGTGATCCTAAGGT
TGTTAATGAGGTGCTCAGTCTTGGCTCGGCTAATGTCAATCTTAGGAACC
CCCGAGGGTACACGGTTCTTCAAGTCGCTGCAAGACGTAAGGAACCATCA
GTGCTGGTGGCCCTGCTGAATAAGGGAGCCTACGTGGCAGAGACTACACC
TGATGGCCAAACTGCTGTCGCGATTTGCAGGAGACTAACTCGGCCCAAGG
ATTATAATGAGAACAAAAAGCAGGGGGAGCTATCCAATAAAGATCGTCTG
TGCATTGATGTCCTTGAGAGAGAGATGCGGAATTCAGTAGAATCTTATAA
TCAGGGAGTTTCATCACAAGTGATGCATGATGATTTACACATGAAACTGG
ATTACTATGAAAATCGAGTCTCATTTGCGCGGTTGTTGTTTCCTGCTGAA
GCCAAGCTGGCTATGGAAATCGCAGATGCAGATTCAAACATAAGGGAAGT
AAATTTGAATGAATCACCTAGCATACAGACCAAAAGGCTTCAGTTGAGAC
TGCAAACCCTGCTTAGAACAGTGGAAACTGGGAGGCGCTACTTTCCACTT
TGTTCAGACGTGCTTGACAAGTTTCTGGTGGATGATATGTCTGATCCTTC
CTTAGTTGAGGAAGGAAGTTCAGAAGAGCAGAGACTGAAGAAAAGGAGAT
TCACAGAACTGAAAGAGGAGCTGCAACAGGCATTTTACAAGGACATAGAA
CAAAAGAAAAGGTCGACTTTGTCCCCATCATGCTCAGCCTCCTCATCTAC
TGCTAAAGAGGGTGCTGCTGCTGCGCCGCGTCACAAAACTAGAAGGAAGT
GA
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protein sequence of Tc01v2_p014100.1

>Tc01v2_p014100.1 ID=Tc01v2_p014100.1|Name=Tc01v2_p014100.1|organism=Theobroma cacao|type=polypeptide|length=584bp
MEYGNEISSPLSFAPSSYLSDGSGGHLIEAATSTEDPGANLEILSLSRLS
CSLEKLLVDQEYDYSDAEIVVEGNIAVGVNRCILAARSQYFHELFRKGRD
DNSMNKEGKPQYLMSELVPHGRVGYEAFKVFLNYLYTGKVKPSPREVSTC
MDDACAHDACGPLITYALELMYASATFQMKELVLLVQRHLLNSVGKALVE
DVIPILVAAFHYKLNPLLYDCIQRVATSGLDDACLEKELPGEVYHEIRSV
RLKSHKQEAEPGAVELDPMLEKRIRRIHKALDSDDVELLRLLLTESNVTL
DDAYALHYAAAYCDPKVVNEVLSLGSANVNLRNPRGYTVLQVAARRKEPS
VLVALLNKGAYVAETTPDGQTAVAICRRLTRPKDYNENKKQGELSNKDRL
CIDVLEREMRNSVESYNQGVSSQVMHDDLHMKLDYYENRVSFARLLFPAE
AKLAMEIADADSNIREVNLNESPSIQTKRLQLRLQTLLRTVETGRRYFPL
CSDVLDKFLVDDMSDPSLVEEGSSEEQRLKKRRFTELKEELQQAFYKDIE
QKKRSTLSPSCSASSSTAKEGAAAAPRHKTRRK*
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