Tc01v2_t013470.2

Overview
NameTc01v2_t013470.2
Unique NameTc01v2_t013470.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1458
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Productserine/threonine-protein phosphatase 5, transcript variant X2
NoteSerine/threonine-protein phosphatase 5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612130
GenbankXM_018113914.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g013470Tc01v2_g013470Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p013470.2Tc01v2_p013470.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto29889auto29889Theobroma cacaoexon
exon-auto29890auto29890Theobroma cacaoexon
exon-auto29891auto29891Theobroma cacaoexon
exon-auto29892auto29892Theobroma cacaoexon
exon-auto29893auto29893Theobroma cacaoexon
exon-auto29894auto29894Theobroma cacaoexon
exon-auto29895auto29895Theobroma cacaoexon
exon-auto29896auto29896Theobroma cacaoexon
exon-auto29897auto29897Theobroma cacaoexon
exon-auto29898auto29898Theobroma cacaoexon
exon-auto29899auto29899Theobroma cacaoexon
exon-auto29900auto29900Theobroma cacaoexon
exon-auto29901auto29901Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto29902auto29902Theobroma cacaoCDS
CDS-auto29903auto29903Theobroma cacaoCDS
CDS-auto29904auto29904Theobroma cacaoCDS
CDS-auto29905auto29905Theobroma cacaoCDS
CDS-auto29906auto29906Theobroma cacaoCDS
CDS-auto29907auto29907Theobroma cacaoCDS
CDS-auto29908auto29908Theobroma cacaoCDS
CDS-auto29909auto29909Theobroma cacaoCDS
CDS-auto29910auto29910Theobroma cacaoCDS
CDS-auto29911auto29911Theobroma cacaoCDS
CDS-auto29912auto29912Theobroma cacaoCDS
CDS-auto29913auto29913Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t013470.2 ID=Tc01v2_t013470.2|Name=Tc01v2_t013470.2|organism=Theobroma cacao|type=mRNA|length=1458bp
ATGCCCAGTATGGAAAATGGAAGTTCTGATGTCTCACGGGCTGAAGAAAT
CAAACTCCAAGCTAATGAAGCATTTAAAGCCCACAAATATGGTCAGGCTA
TTGACTTGTACGCGCGAGCAATAGAGCTAAATGCTCAGAACGCAGTATAC
TGGGCAAATCGTGCATTTGCTCATACCAAATTGGAAGAGTATGGTAGTGC
CATACAGGATGCTACTAAGGCAATTGAAGTGGATCCTAAATATTCAAAGG
GTTACTACAGACGAGGCGCTGCTTATCTTGCCATGGGAAAGTTTAAGGAA
GCACTAAAAGATTTTCAACAGGTAAAAAAGATTTGTCCCAATGATCCTGA
TGCTACTAAGAAATTAAAGGAATGTGAGAAAGCAGTAATGAAATTAAAAT
TTGAAGAAGCAATTGCTGTACCTGAGTCTGAGAGGCATTCTGTAGCTGAC
TCCATTGACTACCATTCCATAGAGGTGGAGCCACAATATTCTGGTGCAAA
AATAGAGGGAGATGTTGTTACTTTGGATTTTGTTAAGAAAATGATGGATG
ACTTCAAGAATCAAAAGTGTTTGCATAAAAGATATGCATTCCAGATTGTC
TTACAAACGAGAGAAATGTTGCAGTCTCAGCCCTCTCTTGTTGATATTAA
TGTTCCTGATGGCAGTCATTTCACTGTCTGTGGTGATGTGCATGGTCAGT
TCTACGATTTGATAAACATTTTCGAGCTTAATGGTCTCCCATCAGAAGAG
AATCCATATCTCTTTAATGGTGACTTTGTGGATAGAGGATCTTTCTCTGT
GGAGGTCATCCTCACACTGTTTGCATTTAAGTGCATGTGTCCATCAGCTA
TTTATCTTGCTAGGGGGAATCATGAGAGTAAGAGCATGAACAAGATATAC
GGTTTTGAGGGTGAGGTCAGGTCCAAGCTGAGTGAAACATTTGTGGAACT
CTTTGCAGAAGTATTTTGTTGTTTGCCTTTGGCTCATGTAATAAATGAAA
AGGTCTTTGTTGTTCATGGAGGCCTTTTTAGTGTTGATGGGGTGAAACTT
TCAGACATCAGAGCAATAGATCGGTTTTGTGAGCCTCCTGAGGAAGGGTT
GATGTGCGAATTGCTTTGGAGTGATCCACAACCTTTCCCAGGACGAGGTC
CTAGCAAGAGGGGAGTGGGTCTTTCTTTTGGTGCAGATGTGACAAGAAAA
TTTTTGCAGGATAACAATCTAGATTTAGTTGTACGATCTCATGAAGTAAA
AGATGAAGGTTATGAGATTGAGCATGATGGTAAACTTATTACTGTTTTCT
CTGCACCAAATTATTGTGACCAGATGGGTAACAAGGGTGCCTTTATTTGC
TTTGAAGCCCCTGATTTGAAGCCAAATATTGTTACGTTCTCAGCAATGCC
TCACCCTGATGTCAAACCAATGGCGTATGCAAACAATTTCCTCCGAATGT
TCCAATAA
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protein sequence of Tc01v2_p013470.2

>Tc01v2_p013470.2 ID=Tc01v2_p013470.2|Name=Tc01v2_p013470.2|organism=Theobroma cacao|type=polypeptide|length=486bp
MPSMENGSSDVSRAEEIKLQANEAFKAHKYGQAIDLYARAIELNAQNAVY
WANRAFAHTKLEEYGSAIQDATKAIEVDPKYSKGYYRRGAAYLAMGKFKE
ALKDFQQVKKICPNDPDATKKLKECEKAVMKLKFEEAIAVPESERHSVAD
SIDYHSIEVEPQYSGAKIEGDVVTLDFVKKMMDDFKNQKCLHKRYAFQIV
LQTREMLQSQPSLVDINVPDGSHFTVCGDVHGQFYDLINIFELNGLPSEE
NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLARGNHESKSMNKIY
GFEGEVRSKLSETFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKL
SDIRAIDRFCEPPEEGLMCELLWSDPQPFPGRGPSKRGVGLSFGADVTRK
FLQDNNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIC
FEAPDLKPNIVTFSAMPHPDVKPMAYANNFLRMFQ*
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