Tc01v2_t012780.3

Overview
NameTc01v2_t012780.3
Unique NameTc01v2_t012780.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length783
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 24 ESTs, 108 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product14-3-3-like protein B, transcript variant X2
Note14-3-3-like protein B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18612046
GenbankXM_007048623.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g012780Tc01v2_g012780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p012780.3Tc01v2_p012780.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto28615auto28615Theobroma cacaoexon
exon-auto28616auto28616Theobroma cacaoexon
exon-auto28617auto28617Theobroma cacaoexon
exon-auto28618auto28618Theobroma cacaoexon
exon-auto28619auto28619Theobroma cacaoexon
exon-auto28620auto28620Theobroma cacaoexon
exon-auto28621auto28621Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto28622auto28622Theobroma cacaoCDS
CDS-auto28623auto28623Theobroma cacaoCDS
CDS-auto28624auto28624Theobroma cacaoCDS
CDS-auto28625auto28625Theobroma cacaoCDS
CDS-auto28626auto28626Theobroma cacaoCDS
CDS-auto28627auto28627Theobroma cacaoCDS
CDS-auto28628auto28628Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t012780.3 ID=Tc01v2_t012780.3|Name=Tc01v2_t012780.3|organism=Theobroma cacao|type=mRNA|length=783bp
ATGGCTTCTTCTAAAGAGCGCGAGAATTTCGTCTACGTCGCCAAGCTCGC
TGAACAGGCTGAGCGCTACGATGAGATGGTGGAGGCTATGAAGAACGTGG
CAAAGCTTGATGTTGAATTGACAGTGGAAGAGAGGAACTTGCTGTCTGTT
GGGTACAAGAATGTGATTGGTGCTCGGAGAGCTTCATGGAGGATTCTTTC
CTCTATAGAGCAAAAGGAAGATGCTAAAGGAAATGAGGTGAATGCAAAGC
GGATCAAGGAGTACAGGCACAAGGTTGAATCTGAGCTCTCAAGCATCTGT
AATGATATTATGACTGTGATTGATGAACATCTCATCCCTTCAGCATCTGC
TGGTGAATCAACTGTCTTCTTCTATAAGATGAAAGCAGATTATTATCGTT
ATCTTGCTGAATTCAAAGCAGGCAATGAGAAGAAAGAGGCTGCTGATCAT
TCTATGAAGGCATATGAGACAGCTACCGCTACTGCAGAGGCTGAGTTGCC
TCCTACACATCCTATCCGTTTGGGTTTAGCCTTGAATTTCTCAGTCTTCT
ATTATGAGATTATGAATACTCCTGAGAGGGCCTGCCATCTTGCCAAGCAA
GCTTTTGATGAAGCTATAGCAGAGCTTGACACCCTCAGTGAGGAGTCTTA
CAAAGACAGCACCTTAATTATGCAGCTTCTAAGGGACAACCTCACCCTTT
GGACTTCTGACATCACAGAGGATCCAGAAGATTCCATGAGGGACTCCACT
GGCAGATCTGGTGCGGGAGATGATGCAGAGTGA
back to top

protein sequence of Tc01v2_p012780.3

>Tc01v2_p012780.3 ID=Tc01v2_p012780.3|Name=Tc01v2_p012780.3|organism=Theobroma cacao|type=polypeptide|length=261bp
MASSKERENFVYVAKLAEQAERYDEMVEAMKNVAKLDVELTVEERNLLSV
GYKNVIGARRASWRILSSIEQKEDAKGNEVNAKRIKEYRHKVESELSSIC
NDIMTVIDEHLIPSASAGESTVFFYKMKADYYRYLAEFKAGNEKKEAADH
SMKAYETATATAEAELPPTHPIRLGLALNFSVFYYEIMNTPERACHLAKQ
AFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDITEDPEDSMRDST
GRSGAGDDAE*
back to top