Tc01v2_t011300.1

Overview
NameTc01v2_t011300.1
Unique NameTc01v2_t011300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length546
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphotosystem I reaction center subunit N, chloroplastic, transcript variant X2
NotePhotosystem I reaction center subunit N, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611871
GenbankXM_018126301.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g011300Tc01v2_g011300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p011300.1Tc01v2_p011300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto23938auto23938Theobroma cacaoexon
exon-auto23939auto23939Theobroma cacaoexon
exon-auto23940auto23940Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto23941auto23941Theobroma cacaoCDS
CDS-auto23942auto23942Theobroma cacaoCDS
CDS-auto23943auto23943Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t011300.1 ID=Tc01v2_t011300.1|Name=Tc01v2_t011300.1|organism=Theobroma cacao|type=mRNA|length=546bp
ATGGCAGCCATGAACTCGAGCGTTTTGGCATGCAACTATGCCATCTCAGG
CACCGGGTCATCTGAGCTTAATGCCAAGCTTGCTTCAGTGCCTTCAGTTG
CTTCCCCAGTTGTGTCTGGTGGTCGCAAGTTGCCTGTGATCAGAGCCCAG
CAGGCTAAAGTTTCTGATCCCGAAGAATCACGTGCCAGTGAAGGAAGAAG
AGCTGCTATGCTCTATTTGGCCGCTACCCTTTTCACCACAGCTGCCGCCT
CTTCTGCAAATGCTAGTGTCTTCGATGAATACCTTGAAAAGAGCAAAGCC
AACAAGGAATTGAATGACAAGAAGAGGTTGGCCACTAGTGGAGCAAACTT
TGCCAGAGCATACACAGTTCAATTTGGCACCTGCAAGTTCCCTGAGAACT
TCACTGGCTGCCAAGATCTCGCAAAGCAAAAGTACCATTCATCTCTGATG
ATTTGGAGTTGGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCCAAT
GTCTTCTGGAAATGGTAAAGAAATCCATATGTATTGCTTTCACTAA
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protein sequence of Tc01v2_p011300.1

>Tc01v2_p011300.1 ID=Tc01v2_p011300.1|Name=Tc01v2_p011300.1|organism=Theobroma cacao|type=polypeptide|length=182bp
MAAMNSSVLACNYAISGTGSSELNAKLASVPSVASPVVSGGRKLPVIRAQ
QAKVSDPEESRASEGRRAAMLYLAATLFTTAAASSANASVFDEYLEKSKA
NKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKYHSSLM
IWSWNVKERTNTSVVPMSSGNGKEIHMYCFH*
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