Tc01v2_t009450.1

Overview
NameTc01v2_t009450.1
Unique NameTc01v2_t009450.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1089
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 79 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Producttranscription factor TGA1, transcript variant X1
NoteTranscription factor TGA1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611650
GenbankXM_007048015.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g009450Tc01v2_g009450Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p009450.1Tc01v2_p009450.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto20227auto20227Theobroma cacaoexon
exon-auto20228auto20228Theobroma cacaoexon
exon-auto20229auto20229Theobroma cacaoexon
exon-auto20230auto20230Theobroma cacaoexon
exon-auto20231auto20231Theobroma cacaoexon
exon-auto20232auto20232Theobroma cacaoexon
exon-auto20233auto20233Theobroma cacaoexon
exon-auto20234auto20234Theobroma cacaoexon
exon-auto20235auto20235Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto20236auto20236Theobroma cacaoCDS
CDS-auto20237auto20237Theobroma cacaoCDS
CDS-auto20238auto20238Theobroma cacaoCDS
CDS-auto20239auto20239Theobroma cacaoCDS
CDS-auto20240auto20240Theobroma cacaoCDS
CDS-auto20241auto20241Theobroma cacaoCDS
CDS-auto20242auto20242Theobroma cacaoCDS
CDS-auto20243auto20243Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t009450.1 ID=Tc01v2_t009450.1|Name=Tc01v2_t009450.1|organism=Theobroma cacao|type=mRNA|length=1089bp
ATGAACTCTCCATCAACCCAGTTTGTACATTCAAGAAGGATGGGTATCTA
TGAGCCTATCCACCAGATTGGCATGTGGGGAGAAAACTTTAAGAGTAATG
GCAATCCAAATACATCTGCATCAGTAATTGTTGAAGTGGATACTAAGCTA
GAGAATGAGTCTGAGACTGCTTCACATGAAATGCTAGCTCCTTCTAACAA
GTATGACCAAGAAGCAACTAAACCTACTGATAAGATACAAAGACGTCTTG
CACAGAACCGTGAGGCTGCTCGTAAAAGTCGTTTGCGGAAAAAGGCATAT
GTTCAACAGTTAGAAAATAGTCGTTTAAAGTTGGTTCAATTGGAGCAAGA
GCTTGAACGGGCAAGGCAACAGGGTCTTTATGTGGGAGGTGGATTAGAAG
GTAGTCATCTTGGATTCTCTGGAGCAGTAAACTCAGGGATTGCTGCATTT
GAGATGGAATATGGACATTGGATGGAAGAACAAAACAGACAAATATGTGA
ACTGAGGACTGCTTTGAATGCCCATATAAGTGATGTAGAGCTTCGCATAC
TTGTGGAAAGTGGAATGAGCCACTATTTTGAACTTTTCCGCATGAAATCA
ACAGCTTCAAAGGCTGATGTTTTTTATGTGATGTCTGGTATGTGGAAAAC
ATCAGCAGAGCGCTTTTTCTCATGGATTGGAGGATTTCGCCCTTCAGAAC
TTCTTAAGGTGCTTGTGCCTCAGCTTGAACCCTTGACAGAACAGCAATTT
TTGGAAGTTTGTAACCTGAAACAATCTTGTCAGCAAGCTGAAGATGCCCT
TTCACAAGGTATGGAGAAACTCCAGGAAACTGTGTCTGCGACTGTAGCAG
CTGGTCAACTGGGTGAAGGTAGTTACATTCCTCAGGTGGCTACTGCAATG
GAGAAGTTAGAAGCTCTAGTCAGCTTTGTGAACCAGGCTGACCATCTTCG
GCAGGAAACGCTGCAGCAGATGTCTCGCATCCTAACAACTCGCCAGGCAG
CTCGAGGCTTACTTGCTTTGGGAGAATACTTCCAACGTCTTCGAGCTTTG
AGTACACTATGGGCTACCCGTCCTCGTGAGCCTGCCTAG
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protein sequence of Tc01v2_p009450.1

>Tc01v2_p009450.1 ID=Tc01v2_p009450.1|Name=Tc01v2_p009450.1|organism=Theobroma cacao|type=polypeptide|length=363bp
MNSPSTQFVHSRRMGIYEPIHQIGMWGENFKSNGNPNTSASVIVEVDTKL
ENESETASHEMLAPSNKYDQEATKPTDKIQRRLAQNREAARKSRLRKKAY
VQQLENSRLKLVQLEQELERARQQGLYVGGGLEGSHLGFSGAVNSGIAAF
EMEYGHWMEEQNRQICELRTALNAHISDVELRILVESGMSHYFELFRMKS
TASKADVFYVMSGMWKTSAERFFSWIGGFRPSELLKVLVPQLEPLTEQQF
LEVCNLKQSCQQAEDALSQGMEKLQETVSATVAAGQLGEGSYIPQVATAM
EKLEALVSFVNQADHLRQETLQQMSRILTTRQAARGLLALGEYFQRLRAL
STLWATRPREPA*
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