Tc01v2_t009000.1

Overview
NameTc01v2_t009000.1
Unique NameTc01v2_t009000.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2067
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productacyl-coenzyme A oxidase 2, peroxisomal
NoteAcyl-coenzyme A oxidase 2, peroxisomal
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611597
GenbankXM_007047935.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g009000Tc01v2_g009000Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p009000.1Tc01v2_p009000.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto19076auto19076Theobroma cacaoexon
exon-auto19077auto19077Theobroma cacaoexon
exon-auto19078auto19078Theobroma cacaoexon
exon-auto19079auto19079Theobroma cacaoexon
exon-auto19080auto19080Theobroma cacaoexon
exon-auto19081auto19081Theobroma cacaoexon
exon-auto19082auto19082Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto19083auto19083Theobroma cacaoCDS
CDS-auto19084auto19084Theobroma cacaoCDS
CDS-auto19085auto19085Theobroma cacaoCDS
CDS-auto19086auto19086Theobroma cacaoCDS
CDS-auto19087auto19087Theobroma cacaoCDS
CDS-auto19088auto19088Theobroma cacaoCDS
CDS-auto19089auto19089Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t009000.1 ID=Tc01v2_t009000.1|Name=Tc01v2_t009000.1|organism=Theobroma cacao|type=mRNA|length=2067bp
ATGAACCCAAATCAGACGGTGGAGGATGAATCACAGCCATCCAACTCAAC
CGTCGCCCGCCGTATCCAACGGCTATCGCTTCACCTGACCCCACTTCCAC
CCCTCCAACCTTCACCTCAGCTCAACATGCTAACTTGCGCCAAGGCCAGT
AAGCTGGAGGTTGACCATGGCCCTCTTTCAAGCTACATGAGAGGGAAGCA
TAGGGAAATTCAAGAGAAAATTTTTGAGTTTTTCAACTCAAGGCCTGATT
TGCAGACGCCAATTGAGATTTCAATGGATGAACATAGAGAACTTTGTATG
AGACAGCTTATGGGGTTGGTTAGAGAAGCAAAGATTAAGCCTTTTAGATA
TGTTGTTGAAGATCCTGCTAAGTATTTTGCTATCACTGAGGCTGTTGGGA
GTGTTGATATGTCTCTTGGGATCAAATTTGGTGTACAATATAGTCTTTGG
GGAGGTTCTGTGCTCAACTTAGGAACTAAAAAGCACCGGGATAAGTATTT
TGAGGGTATTGACAATTTGGATTATCCTGGTTGTTTCGCAATGACAGAAC
TACATCATGGCTCAAATGTTCAGGGTCTCCAAACCACTGCAACCTTTGAT
CCAATCACAGATGAATTTATAATCGATACACCAAATGATGGGGCCATCAA
ATGGTGGATTGGCAATGCTGCAGTTCATGGCAAGTTTGCAACAGTTTTTG
CTAGGCTGATTTTGCCAACTCATGACTCTAAAGGAGTTTCTGATATGGGA
GTCCATGCTTTCATTGTGCCAATAAGGGATTTAAAAACCAACCAGACACT
TCCAGGAATTGAAATACATGATTGTGGCCACAAAGTTGGCTTGAATGGGG
TCGATAATGGAGCACTGAGATTCAGTTCGGTTAGAATTCCCCGAGATAAC
CTTCTTAATCGATTCGGGGATGTTTCTCGAGATGGAAAATACACAAGTAG
TCTCCCTACAATAAACAAACGTTTTGCTGCTACACTAGGTGAACTTGTAG
GTGGGAGAGTTGGCCTTGCATATGCTTCAGTTGGTGTCCTCAAGATTTCT
GTCACTATTGCAGTGCGATACTCCTTACTACGTCAGCAATTTGGTCCTCC
CAAGCAGCCTGAAGTCTACATTCTTGATTATCAATCTCACCAGCACAAGC
TCATGCCAATGCTGGCTTCAACTTATGCATTTCATTTTGCCACTCAGTAT
TTGGTGGAGAAATATTCAGAGATGAAGAAGACGCATGATGAGCAACTGGT
TGGAGATGTCCATGCGCTTTCTGCAGGCCTGAAATCCTATGTGACATCAT
ATACAGCAAAGTCACTGAGTGCTTGCAGGGAAGCCTGTGGAGGCCATGGG
TACGCTGCTGTCAACCGGTTTGGTAGCTTGAGGAATGATCATGACATTTT
CCAGACATTTGAAGGAGATAACACAGTTCTTCTGCAACAGGTAGCTGGTG
ATCTGTTGAAGCAATACAAGGACAAGTTCCAAGGTGGTCCTCTTTCAGTC
ACATGGAACTACTTGAGAGAATCTATGAACACATACTTGTCTCAGCCAAA
TCCTGTAACTGCCCGTTGGGAAAGCACAGACCACTTGCGAGACCCTAAAT
TCCAGTTGGATGCCTTCAGGTACCGAACCTCAAGATTGCTTCAAAGTGTA
GCAGCACGACTTCGGAAGCACTCTAAAACTCTTGGCAGCTTTGGTGCATG
GAATAGGTGCTTGAATCACCTTCTCACACTTGCAGAGTCTCATATTGAGT
CTGTCATCCTTGCAAAGTTTATTGATGCTGTGCAAAACTGTCCTGATGCA
CGTAGTCGAGCTGCTCTAAAGCTTGTCTGTGATCTTTATGCCCTGGATCG
AATCTGGAAAGACATAGGAACTTACCGTAATGTTGATTATGTTGCACCAA
ACAAAGCTAAGGCAATCCACAAGCTCACAGAATACCTGAGTTTCCAAGTG
AGAAATATTGCAGGGGAGCTTATAGATGCATTTGATCTTCCGCCTTACGT
GACACGGGCCCCAATTGCAATGCAGTCAGAGGCGTATGCACAGTACACAC
AGCGTGTTGGGTTCTAA
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protein sequence of Tc01v2_p009000.1

>Tc01v2_p009000.1 ID=Tc01v2_p009000.1|Name=Tc01v2_p009000.1|organism=Theobroma cacao|type=polypeptide|length=689bp
MNPNQTVEDESQPSNSTVARRIQRLSLHLTPLPPLQPSPQLNMLTCAKAS
KLEVDHGPLSSYMRGKHREIQEKIFEFFNSRPDLQTPIEISMDEHRELCM
RQLMGLVREAKIKPFRYVVEDPAKYFAITEAVGSVDMSLGIKFGVQYSLW
GGSVLNLGTKKHRDKYFEGIDNLDYPGCFAMTELHHGSNVQGLQTTATFD
PITDEFIIDTPNDGAIKWWIGNAAVHGKFATVFARLILPTHDSKGVSDMG
VHAFIVPIRDLKTNQTLPGIEIHDCGHKVGLNGVDNGALRFSSVRIPRDN
LLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYASVGVLKIS
VTIAVRYSLLRQQFGPPKQPEVYILDYQSHQHKLMPMLASTYAFHFATQY
LVEKYSEMKKTHDEQLVGDVHALSAGLKSYVTSYTAKSLSACREACGGHG
YAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAGDLLKQYKDKFQGGPLSV
TWNYLRESMNTYLSQPNPVTARWESTDHLRDPKFQLDAFRYRTSRLLQSV
AARLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIDAVQNCPDA
RSRAALKLVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLTEYLSFQV
RNIAGELIDAFDLPPYVTRAPIAMQSEAYAQYTQRVGF*
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