Tc01v2_t007200.2

Overview
NameTc01v2_t007200.2
Unique NameTc01v2_t007200.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1125
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 15 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productauxin-responsive protein IAA9, transcript variant X2
NoteAuxin-responsive protein IAA9
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611393
GenbankXM_007047626.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g007200Tc01v2_g007200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p007200.2Tc01v2_p007200.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto15685auto15685Theobroma cacaoexon
exon-auto15686auto15686Theobroma cacaoexon
exon-auto15687auto15687Theobroma cacaoexon
exon-auto15688auto15688Theobroma cacaoexon
exon-auto15689auto15689Theobroma cacaoexon
exon-auto15690auto15690Theobroma cacaoexon
exon-auto15691auto15691Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto15692auto15692Theobroma cacaoCDS
CDS-auto15693auto15693Theobroma cacaoCDS
CDS-auto15694auto15694Theobroma cacaoCDS
CDS-auto15695auto15695Theobroma cacaoCDS
CDS-auto15696auto15696Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t007200.2 ID=Tc01v2_t007200.2|Name=Tc01v2_t007200.2|organism=Theobroma cacao|type=mRNA|length=1125bp
ATGTCTCAACCGCTGCTGGGCGTGGAGGAGGAAGGGCAGAGTAATGTTTC
TTCTCCCTCTGATGACTGTATCTCCCAGAATGGCTTGGGATTAAAGGAGC
GTAATTATCTTGGACTATCAGATTGTTCCTCAGTTGACAGCTCTGGTGTC
TCGAGCTTGACAGAGGATAACAAGAACAATCTGAATTTGAAGGCTACAGA
GCTGAGGCTTGGTCTTCCTGGATCCCAGTCCCCTGAGAGAGAACCAGAGC
TTTGCTTACTGAACTCAGGAAAACTTGATGAGAAACCACTGTTTCCTCTA
CTTCCTTCTAAAGATGGAATCTGCTCATCATCACAGAAAACTGTTGTTTC
TGGAAACAAAAGGGGGTTCTCTGACACCATGGATGGATTCTCAGAGGTGA
AAGGCTCTGTGTACACTGAAAAAATTTGGATGTTTCCTGGAGCTGGTTCT
GATTCTGAATCTCCACAAACTGTGGGACACGGAAAATATCCTGGTAATCC
AGGGGTCAATGTGATGCTGTCGGCAAGGTCTTCTGGAGCTCAAGCATCTG
TAAAGAAAGATGGGCCTCCAAATGCACTACAAGAACGACCTCGTGCCCCA
AATGGAACAAGCCTCAAACAAACTGGCATTTCTAACAACAACAGCAGTGC
ACCTGCTGCCAAGGCACAGGTTGTTGGTTGGCCACCAATAAGATCATTTA
GGACTAAAACACTGGCCACTTCTTCAAAGAACAATGATGAAGTTGATGGA
AAACCAGGTCCCGGTGCTCTTTTTATCAAGGTCAGTATGGATGGGGCTCC
TTATCTGAGGAAGGTGGATTTGAGAACTTATTCAACTTATCGGGAACTAT
CTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACCCTTGGTCAATGTGGG
TCTCATGGTTCTCCTGGGAAGGAAATCTTGAGTGAGAGCAAGTTGAAGGA
TCTTTTGCATGGATCAGAATATGTGCTTACATACGAAGATAAAGATGGGG
ACTGGATGCTTGTTGGAGATGTACCATGGGAGATGTTTATTGAAACATGC
AAGAGGCTGAAAATCATGAAGAGCTCTGATGCGATTGGATTAGCTAAGAT
GTCTATTTGTTGCCTTGACATCTGA
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protein sequence of Tc01v2_p007200.2

>Tc01v2_p007200.2 ID=Tc01v2_p007200.2|Name=Tc01v2_p007200.2|organism=Theobroma cacao|type=polypeptide|length=375bp
MSQPLLGVEEEGQSNVSSPSDDCISQNGLGLKERNYLGLSDCSSVDSSGV
SSLTEDNKNNLNLKATELRLGLPGSQSPEREPELCLLNSGKLDEKPLFPL
LPSKDGICSSSQKTVVSGNKRGFSDTMDGFSEVKGSVYTEKIWMFPGAGS
DSESPQTVGHGKYPGNPGVNVMLSARSSGAQASVKKDGPPNALQERPRAP
NGTSLKQTGISNNNSSAPAAKAQVVGWPPIRSFRTKTLATSSKNNDEVDG
KPGPGALFIKVSMDGAPYLRKVDLRTYSTYRELSSALEKMFSCFTLGQCG
SHGSPGKEILSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETC
KRLKIMKSSDAIGLAKMSICCLDI*
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