Tc01v2_t005760.3

Overview
NameTc01v2_t005760.3
Unique NameTc01v2_t005760.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1617
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
ProductF-box-like/WD repeat-containing protein TBL1XR1, transcript variant X3
NotePutative COMPASS-like H3K4 histone methylase component WDR5A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611220
GenbankXM_018127486.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g005760Tc01v2_g005760Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p005760.3Tc01v2_p005760.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto12860auto12860Theobroma cacaoexon
exon-auto12861auto12861Theobroma cacaoexon
exon-auto12862auto12862Theobroma cacaoexon
exon-auto12863auto12863Theobroma cacaoexon
exon-auto12864auto12864Theobroma cacaoexon
exon-auto12865auto12865Theobroma cacaoexon
exon-auto12866auto12866Theobroma cacaoexon
exon-auto12867auto12867Theobroma cacaoexon
exon-auto12868auto12868Theobroma cacaoexon
exon-auto12869auto12869Theobroma cacaoexon
exon-auto12870auto12870Theobroma cacaoexon
exon-auto12871auto12871Theobroma cacaoexon
exon-auto12872auto12872Theobroma cacaoexon
exon-auto12873auto12873Theobroma cacaoexon
exon-auto12874auto12874Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto12875auto12875Theobroma cacaoCDS
CDS-auto12876auto12876Theobroma cacaoCDS
CDS-auto12877auto12877Theobroma cacaoCDS
CDS-auto12878auto12878Theobroma cacaoCDS
CDS-auto12879auto12879Theobroma cacaoCDS
CDS-auto12880auto12880Theobroma cacaoCDS
CDS-auto12881auto12881Theobroma cacaoCDS
CDS-auto12882auto12882Theobroma cacaoCDS
CDS-auto12883auto12883Theobroma cacaoCDS
CDS-auto12884auto12884Theobroma cacaoCDS
CDS-auto12885auto12885Theobroma cacaoCDS
CDS-auto12886auto12886Theobroma cacaoCDS
CDS-auto12887auto12887Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t005760.3 ID=Tc01v2_t005760.3|Name=Tc01v2_t005760.3|organism=Theobroma cacao|type=mRNA|length=1617bp
ATGGAAGCCAACTTGAGTAATAATGATGTAGAAATGGATGAAGATTTCTC
ATTCTTACAACCTTTGGATATAATAACAAAGGATGTAAATCAATTGCGGC
AAATGATAAAAGAGAAAAGGAAGAGTGTCCAAAAGGATAGAGAGAAAGAG
AAAGATAAAGATAAAGAGTTTGACCGGGAACATGAAGGAGAGCGTGGACG
AGTAAGAGAGAAAGAAAGACATGAGAGGGAGAAGGAACGTGAAAAGGAAA
GGGAGAAGGATCGTGAAAAGGAAAGGGAGAAGGAACATGAAAAGGAAAGG
GAGAAGGAACATGCAAAGGAAAGGGAGAAGGAATGCGAAAAGGAAAGGGA
GAAGGTTGAAAGGGATAAGGAGCGAGAAAAGCAACCGGAGGAACTTGCTG
ATAGGGATATGGTTATGGATCAAGAAGACAAGGATGTTGTCAAGAATGAA
GAAAATGGAACGTCTGTAGTAGGACCAGAACCTATGGATATTGCTACTAC
CTCAGCCCCTGCTTCTCAAGAGGCTTGTGAAATTCCTAATTCTGATGTGA
CAATTTTGGAAGGGCATACTTCTGAGGTTTGTGCTTGTGCATGGAGTCCA
ACTGGTTCACTTCTTGCATCAGGGTCTGGAGATTCAACAGCTCGTATTTG
GACAATAGCTGATGGGCTTTGCAAATCTGGTACACAAAACAGTCCATTAA
ATGTTCTGGTGCTGAAGCATGTAAAAGGAAGAACAAATGAGAAGAGCAAA
GACGTGACAACACTCGACTGGAATGGTGAGGGGACATCGCTTGCAACAGG
TTCATATGATGGCCAAGCAAGAATTTGGACTACGAATGGTGAACTAAGGA
CTACTTTGAGTAAACACAAAGGACCAATATTTTCCCTGAAGTGGAACAAA
AAGGGTGATTATCTTCTTACAGGAAGCTGTGATAAAACGGCAATTGTGTG
GGATGTAAAGGCAGAGGAATGGAAACAGCAGTTTGAGTTTCACACGGGTC
CAACCCTTGATGTTGATTGGCGCAACAATGTTTCATTTGCAACAAGCTCC
ACAGACCATATGATATATGTTTGCAAGATTGGAGAAACCCGCCCTATTAA
AACCTTTGCAGGGCATCAGGGTGAAGTAAATTGTGTCAAATGGGATCCTA
CAGGTTCACTATTGGCCTCTTGCTCTGATGATATTACTGCAAAGATATGG
TGTATGAAGCAGGATAAGTATGTACATGATCTGAGGGAGCATTCTAAGGA
GATATATGCCATCAGATGGAGTCCTACGGGGCCTGGGACAAACAATCCTA
ACCAGCAGTTAATTCTTGCAAGTGCATCATTTGACTCCACAGTGAAGCTG
TGGGATGTGGAGTTAGGGAAACTTCTCTACAGTTTGAATGGACACAGGGA
TCCTGTATATTCGGTTGCATTTAGCCCAAATGGAGAGTATCTGGCCAGTG
GGTCTCTTGATAAATCCATGCATGTCTGGTCCTTAAAGGAAGGAAAGATT
GTAAAGACATATACTGGCAATGGGGGTATATTTGAAGTCTGTTGGAACAA
GGAAGGTGACAAGATTGCTGCTTGTTTTGCAAACAATACACTATGTGTCC
TGGACTTTAGAATGTGA
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protein sequence of Tc01v2_p005760.3

>Tc01v2_p005760.3 ID=Tc01v2_p005760.3|Name=Tc01v2_p005760.3|organism=Theobroma cacao|type=polypeptide|length=539bp
MEANLSNNDVEMDEDFSFLQPLDIITKDVNQLRQMIKEKRKSVQKDREKE
KDKDKEFDREHEGERGRVREKERHEREKEREKEREKDREKEREKEHEKER
EKEHAKEREKECEKEREKVERDKEREKQPEELADRDMVMDQEDKDVVKNE
ENGTSVVGPEPMDIATTSAPASQEACEIPNSDVTILEGHTSEVCACAWSP
TGSLLASGSGDSTARIWTIADGLCKSGTQNSPLNVLVLKHVKGRTNEKSK
DVTTLDWNGEGTSLATGSYDGQARIWTTNGELRTTLSKHKGPIFSLKWNK
KGDYLLTGSCDKTAIVWDVKAEEWKQQFEFHTGPTLDVDWRNNVSFATSS
TDHMIYVCKIGETRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDITAKIW
CMKQDKYVHDLREHSKEIYAIRWSPTGPGTNNPNQQLILASASFDSTVKL
WDVELGKLLYSLNGHRDPVYSVAFSPNGEYLASGSLDKSMHVWSLKEGKI
VKTYTGNGGIFEVCWNKEGDKIAACFANNTLCVLDFRM*
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