Tc01v2_t003630.1

Overview
NameTc01v2_t003630.1
Unique NameTc01v2_t003630.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1113
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 40 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Productgeranylgeranyl pyrophosphate synthase, chloroplastic
NoteGeranylgeranyl pyrophosphate synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610991
GenbankXM_007046967.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g003630Tc01v2_g003630Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p003630.1Tc01v2_p003630.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto8421auto8421Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto8422auto8422Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t003630.1 ID=Tc01v2_t003630.1|Name=Tc01v2_t003630.1|organism=Theobroma cacao|type=mRNA|length=1113bp
ATGACTACAATGAATCTGGGTTCTTGGGTTCAATCTTACTCCATTTTCAA
CCAAGCTTCCAGATCGAAATCCTTTCCTTTACCCAGATCCTTCCCCTTCA
ATCCCCTCAAAAATTTGTCATCTTCAACCCCCAAAAAGCGCAGCTTGACA
TCTCTTCCTTCAATTTCCGCAGTCCTTACCAAAGAAGACACTATTAAGGA
AGAAGAACAAGACCCTCAAAAACCAAGCTTTGATTTCAAATCCTACATGG
TTCAAAAAGCCAGTACAGTTAACCAAGCTCTGGACTCAGCTGTTTCACTC
CGTGACCCTGTTAAAATCCACGAAGCAATGCGTTACTCTCTTTTAGCAGG
TGGCAAAAGGGTCCGCCCTGCGCTTTGTTTAGCTGCCTGTGAACTTGTTG
GTGGCCAAGAATCCATGGCTATGCCAGCAGCTTGTGCTGTCGAAATGATC
CACACCATGTCTTTAATCCACGATGATCTTCCTTGCATGGATAACGATGA
TCTTCGTAGAGGAAAACCGACTAACCACAAAGTTTTTGGTGAGGATATAG
CTGTCTTAGCAGGGGATGCTCTTTTAGCTTTTGCTTTTGAACATATAGCT
GTTTCTACAGTTGGTGTTACGCCTGGTAGGGTTGTAAAGGCAGTTGGGGA
ATTAGCCAAAGCTATTGGAACTGAAGGGTTAGTGGCTGGTCAAGTTGTGG
ATATAAATAGTGAGGGACTAATAGATGTGGGATTGGATCATCTAGAATTT
ATTCACGTTCACAAAACCGCTGTTTTGCTTGAAGCGGCAGTGGTTTTGGG
GGCAATTCTTGGAGGTGGATGTGATGAAGATGTGGAAAAGTTGAGGAAGT
TTGCCCGGTATATTGGGCTTTTGTTTCAGGTTGTGGATGATATTCTCGAT
GTGACAAAGTCATCCAAGGATTTAGGGAAGACTGCAGGGAAAGATTTGGT
GGCTGATAAAGTGACTTATCCAAAGCTGATGGGGATAGAGAAGTCAAGGG
AGTTTGCAGAGAAGTTGAAGAGTGATGCGCTTGAGTTGCTCCAAGGATTT
GATCCTGAGAAAGCTGCTCCTTTGGTTGCTTTGGCTAATTATATAGCTTA
CAGGCAAAACTAA
back to top

protein sequence of Tc01v2_p003630.1

>Tc01v2_p003630.1 ID=Tc01v2_p003630.1|Name=Tc01v2_p003630.1|organism=Theobroma cacao|type=polypeptide|length=371bp
MTTMNLGSWVQSYSIFNQASRSKSFPLPRSFPFNPLKNLSSSTPKKRSLT
SLPSISAVLTKEDTIKEEEQDPQKPSFDFKSYMVQKASTVNQALDSAVSL
RDPVKIHEAMRYSLLAGGKRVRPALCLAACELVGGQESMAMPAACAVEMI
HTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDIAVLAGDALLAFAFEHIA
VSTVGVTPGRVVKAVGELAKAIGTEGLVAGQVVDINSEGLIDVGLDHLEF
IHVHKTAVLLEAAVVLGAILGGGCDEDVEKLRKFARYIGLLFQVVDDILD
VTKSSKDLGKTAGKDLVADKVTYPKLMGIEKSREFAEKLKSDALELLQGF
DPEKAAPLVALANYIAYRQN*
back to top