Tc01v2_t002940.1

Overview
NameTc01v2_t002940.1
Unique NameTc01v2_t002940.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1077
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Productzinc-finger homeodomain protein 6
NoteHomeobox protein 24, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610918
GenbankXM_018113977.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g002940Tc01v2_g002940Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p002940.1Tc01v2_p002940.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto6861auto6861Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto6862auto6862Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t002940.1 ID=Tc01v2_t002940.1|Name=Tc01v2_t002940.1|organism=Theobroma cacao|type=mRNA|length=1077bp
ATGGAACTGAGAGGCCAAGATAAGGAAATGGGGATGCCAAGCTCTTTTAG
TTATAATAATCAACTCAACAGGGATTCTTCCTCAAAAGTCTCTTCTTCTG
CACCTATAAATTCAGGTGTGGGAGAAAGGAGGAGAGATCAAACTGTTCAT
GGTGACACAACAGTCCTCAATCCAAACCCACCTCAAACCCTAGATCTCCA
CCCTCTTTACCACCCTGAATTGAATCCACAACACCAAATACACAAGCCCA
GAAGAGATCCAGACCCAGACCCAGACCCAGATCCGGTGTCAGCTCCAACA
GCTACCACCAGTGCAACAGTGACTGCTTCAGCTAACAGATCAAGCCTAAA
ATCACCACAGCAACAACCTCCAACATCACAGCCCCCGCCAGTGGCAGCTG
CATCACCAACAACTATCAGCTCTACTCCTTTGATTAGATATAGAGAATGT
ATGAAGAACCACGCAGCCAGCATGGGCAGCCATGTTATGGATGGCTGCGG
AGAATTCATGCCAAGCGGCGAAGAAGGCACCCCGGAAGCCTTGAAATGCG
CAGCTTGTGAATGCCACAGGAATTTTCATAGAAAAGAAATCAACGGGGAA
ACACAATATGCACCAAGCTGTTATTATTCCTATAACCCCAACAAAAACAA
CAACAGAAGAGATACTACACATCCTCCTTCTCAGCTACATCCTCAACAAC
CAATCCCTCTTCATCAACAAAGATTCTCTCTTGGATTGTCTACTAGTCCT
ACTGCCATGCCAATTGCACCTGTAATGATGAACTTCCGTGGTGGCGGCCT
GGCTGAGTCCTCAAGTGAAGATCTGAATATGTTTCATTCTAATGCAGGAG
GGCAAATATCGGCGCAGCCACAGTCATCAAAGAAGAGGTTCAGAACAAAG
TTCAGTCAAGAGCAGAAGGATAAGATGATGGAATTCGCTGAGAAGTTGGG
GTGGAGAATCCAGAAGCAAGATGAGCAAGAAGTGCAGCAGTTTTGCGCTC
AAGTGGGAGTAAAGAGACAGGTTTTCAAAGTTTGGATGCACAACAATAAA
CAAGCCATGAAGAAAAAGCAAATGTAA
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protein sequence of Tc01v2_p002940.1

>Tc01v2_p002940.1 ID=Tc01v2_p002940.1|Name=Tc01v2_p002940.1|organism=Theobroma cacao|type=polypeptide|length=359bp
MELRGQDKEMGMPSSFSYNNQLNRDSSSKVSSSAPINSGVGERRRDQTVH
GDTTVLNPNPPQTLDLHPLYHPELNPQHQIHKPRRDPDPDPDPDPVSAPT
ATTSATVTASANRSSLKSPQQQPPTSQPPPVAAASPTTISSTPLIRYREC
MKNHAASMGSHVMDGCGEFMPSGEEGTPEALKCAACECHRNFHRKEINGE
TQYAPSCYYSYNPNKNNNRRDTTHPPSQLHPQQPIPLHQQRFSLGLSTSP
TAMPIAPVMMNFRGGGLAESSSEDLNMFHSNAGGQISAQPQSSKKRFRTK
FSQEQKDKMMEFAEKLGWRIQKQDEQEVQQFCAQVGVKRQVFKVWMHNNK
QAMKKKQM*
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