Tc01v2_t001630.3

Overview
NameTc01v2_t001630.3
Unique NameTc01v2_t001630.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length969
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
ProductWD repeat-containing protein 82-B, transcript variant X3
NotePutative Autophagy-related protein 16
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610777
GenbankXM_018114417.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g001630Tc01v2_g001630Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p001630.3Tc01v2_p001630.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto4436auto4436Theobroma cacaoexon
exon-auto4437auto4437Theobroma cacaoexon
exon-auto4438auto4438Theobroma cacaoexon
exon-auto4439auto4439Theobroma cacaoexon
exon-auto4440auto4440Theobroma cacaoexon
exon-auto4441auto4441Theobroma cacaoexon
exon-auto4442auto4442Theobroma cacaoexon
exon-auto4443auto4443Theobroma cacaoexon
exon-auto4444auto4444Theobroma cacaoexon
exon-auto4445auto4445Theobroma cacaoexon
exon-auto4446auto4446Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto4447auto4447Theobroma cacaoCDS
CDS-auto4448auto4448Theobroma cacaoCDS
CDS-auto4449auto4449Theobroma cacaoCDS
CDS-auto4450auto4450Theobroma cacaoCDS
CDS-auto4451auto4451Theobroma cacaoCDS
CDS-auto4452auto4452Theobroma cacaoCDS
CDS-auto4453auto4453Theobroma cacaoCDS
CDS-auto4454auto4454Theobroma cacaoCDS
CDS-auto4455auto4455Theobroma cacaoCDS
CDS-auto4456auto4456Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t001630.3 ID=Tc01v2_t001630.3|Name=Tc01v2_t001630.3|organism=Theobroma cacao|type=mRNA|length=969bp
ATGGAAATCGGCATGGTTTTCAAAGATTATAGCGGTAGAATCAGTTCGAT
GGATTTCCACAGAACATCGAATTATTTAGTAACTGCTAGTGAAGATGAAT
CCATCCGCCTTTATGATGTTTCCAGTGCTACATGTTTGAAAACAATAAAT
AGCAAAAAGTATGGGGTTGATCTAGTTTGCTTTACTTCGCATCCAACAAC
AGTTATTTACTCTTCAAAGAATGGTTGGGATGAATCATTGCGACATCTCT
CCTTGCATGATAACAAGTACTTGCGGTATTTTAAAGGACACCACGACAGA
GTTGTTTCACTTAGCCTTTGCTCACGCAATGAATGCTTCATCTCTGGTTC
TCTTGATCGAACTGTTCTGCTTTGGGATCAACGAGCAGAGAAATGTCAGG
GTCTTTTACGCGTGCAAGGAAGGCCTGCCATAGCTTATGATGATCAAGGA
CTAGTCTTTGCTGTTGCCTTTGGAGGATACATCAGAATGTTTGATGCTCG
CAAGTTTGAAAAGGGTCCTTTTGAAATCTTTTCTGTTGGGGGAGATGTAT
CTGATGCTAATGTTGTAAAGTTCAGCAACGATGGACGACTCATGCTTTTG
ACAACTATGAATGGACGTATTCATGTGCTTGATTCATTTCGTGGCACACT
TTTATCCACATACAATGTCAAGCCAGTGTCTAGCAATTCCACATTGGAGG
CATCTTTCAGCCCTGAGGGAATGTTTGTTATATCAGGTTCAGGTGATGGT
CGTGCATATGCTTGGAGTGTAAGGAGTGGGAAAGAAGTTGCAAGTTGGAT
GATGAATGGTGAACCTTCTGTATTAAATTGGAATTGGATGAGCACTGATA
CTGAGCCTCCTGTCATTAAGTGGGCTCCTGGGAATCTTATGTTTGTAACT
GGGTCTACTGAGCTGTCATTTTGGATTCCGGATCTGTCTAAATTGGCAGC
TTATGTAGGAAGGAAGTAG
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protein sequence of Tc01v2_p001630.3

>Tc01v2_p001630.3 ID=Tc01v2_p001630.3|Name=Tc01v2_p001630.3|organism=Theobroma cacao|type=polypeptide|length=323bp
MEIGMVFKDYSGRISSMDFHRTSNYLVTASEDESIRLYDVSSATCLKTIN
SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRHLSLHDNKYLRYFKGHHDR
VVSLSLCSRNECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAIAYDDQG
LVFAVAFGGYIRMFDARKFEKGPFEIFSVGGDVSDANVVKFSNDGRLMLL
TTMNGRIHVLDSFRGTLLSTYNVKPVSSNSTLEASFSPEGMFVISGSGDG
RAYAWSVRSGKEVASWMMNGEPSVLNWNWMSTDTEPPVIKWAPGNLMFVT
GSTELSFWIPDLSKLAAYVGRK*
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