Tc01v2_t001630.2

Overview
NameTc01v2_t001630.2
Unique NameTc01v2_t001630.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1038
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductWD repeat-containing protein 82-B, transcript variant X2
NoteTransducin/WD40 repeat-like superfamily protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610777
GenbankXM_018114416.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g001630Tc01v2_g001630Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p001630.2Tc01v2_p001630.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto4412auto4412Theobroma cacaoexon
exon-auto4413auto4413Theobroma cacaoexon
exon-auto4414auto4414Theobroma cacaoexon
exon-auto4415auto4415Theobroma cacaoexon
exon-auto4416auto4416Theobroma cacaoexon
exon-auto4417auto4417Theobroma cacaoexon
exon-auto4418auto4418Theobroma cacaoexon
exon-auto4419auto4419Theobroma cacaoexon
exon-auto4420auto4420Theobroma cacaoexon
exon-auto4421auto4421Theobroma cacaoexon
exon-auto4422auto4422Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto4423auto4423Theobroma cacaoCDS
CDS-auto4424auto4424Theobroma cacaoCDS
CDS-auto4425auto4425Theobroma cacaoCDS
CDS-auto4426auto4426Theobroma cacaoCDS
CDS-auto4427auto4427Theobroma cacaoCDS
CDS-auto4428auto4428Theobroma cacaoCDS
CDS-auto4429auto4429Theobroma cacaoCDS
CDS-auto4430auto4430Theobroma cacaoCDS
CDS-auto4431auto4431Theobroma cacaoCDS
CDS-auto4432auto4432Theobroma cacaoCDS
CDS-auto4433auto4433Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t001630.2 ID=Tc01v2_t001630.2|Name=Tc01v2_t001630.2|organism=Theobroma cacao|type=mRNA|length=1038bp
ATGGTTGGGCCGCAACCCGAGAGAGAAGAGAAAGTATCCTTGGACCTCAC
CGAAGAAATCCTTCAAAGCATGGAAATCGGCATGGTTTTCAAAGATTATA
GCGGTAGAATCAGTTCGATGGATTTCCACAGAACATCGAATTATTTAGTA
ACTGCTAGTGAAGATGAATCCATCCGCCTTTATGATGTTTCCAGTGCTAC
ATGTTTGAAAACAATAAATAGCAAAAAGTATGGGGTTGATCTAGTTTGCT
TTACTTCGCATCCAACAACAGTTATTTACTCTTCAAAGAATGGTTGGGAT
GAATCATTGCGACATCTCTCCTTGCATGATAACAAGTACTTGCGGTATTT
TAAAGGACACCACGACAGAGTTGTTTCACTTAGCCTTTGCTCACGCAATG
AATGCTTCATCTCTGGTTCTCTTGATCGAACTGTTCTGCTTTGGGATCAA
CGAGCAGAGAAATGTCAGGGTCTTTTACGCGTGCAAGGAAGGCCTGCCAT
AGCTTATGATGATCAAGGACTAGTCTTTGCTGTTGCCTTTGGAGGATACA
TCAGAATGTTTGATGCTCGCAAGTTTGAAAAGGGTCCTTTTGAAATCTTT
TCTGTTGGGGGAGATGTATCTGATGCTAATGTTGTAAAGTTCAGCAACGA
TGGACGACTCATGCTTTTGACAACTATGAATGGACGTATTCATGTGCTTG
ATTCATTTCGTGGCACACTTTTATCCACATACAATGTCAAGCCAGTGTCT
AGCAATTCCACATTGGAGGCATCTTTCAGCCCTGAGGGAATGTTTGTTAT
ATCAGGTTCAGGTGATGGTCGTGCATATGCTTGGAGTGTAAGGAGTGGGA
AAGAAGTTGCAAGTTGGATGATGAATGGTGAACCTTCTGTATTAAATTGG
AATTGGATGAGCACTGATACTGAGCCTCCTGTCATTAAGTGGGCTCCTGG
GAATCTTATGTTTGTAACTGGGTCTACTGAGCTGTCATTTTGGATTCCGG
ATCTGTCTAAATTGGCAGCTTATGTAGGAAGGAAGTAG
back to top

protein sequence of Tc01v2_p001630.2

>Tc01v2_p001630.2 ID=Tc01v2_p001630.2|Name=Tc01v2_p001630.2|organism=Theobroma cacao|type=polypeptide|length=346bp
MVGPQPEREEKVSLDLTEEILQSMEIGMVFKDYSGRISSMDFHRTSNYLV
TASEDESIRLYDVSSATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD
ESLRHLSLHDNKYLRYFKGHHDRVVSLSLCSRNECFISGSLDRTVLLWDQ
RAEKCQGLLRVQGRPAIAYDDQGLVFAVAFGGYIRMFDARKFEKGPFEIF
SVGGDVSDANVVKFSNDGRLMLLTTMNGRIHVLDSFRGTLLSTYNVKPVS
SNSTLEASFSPEGMFVISGSGDGRAYAWSVRSGKEVASWMMNGEPSVLNW
NWMSTDTEPPVIKWAPGNLMFVTGSTELSFWIPDLSKLAAYVGRK*
back to top