Tc01v2_t000790.1

Overview
NameTc01v2_t000790.1
Unique NameTc01v2_t000790.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1344
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
ProductIST1-like protein
NoteRegulator of Vps4 activity in the MVB pathway protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610685
GenbankXM_007046498.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000790Tc01v2_g000790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000790.1Tc01v2_p000790.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2650auto2650Theobroma cacaoexon
exon-auto2651auto2651Theobroma cacaoexon
exon-auto2652auto2652Theobroma cacaoexon
exon-auto2653auto2653Theobroma cacaoexon
exon-auto2654auto2654Theobroma cacaoexon
exon-auto2655auto2655Theobroma cacaoexon
exon-auto2656auto2656Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2657auto2657Theobroma cacaoCDS
CDS-auto2658auto2658Theobroma cacaoCDS
CDS-auto2659auto2659Theobroma cacaoCDS
CDS-auto2660auto2660Theobroma cacaoCDS
CDS-auto2661auto2661Theobroma cacaoCDS
CDS-auto2662auto2662Theobroma cacaoCDS
CDS-auto2663auto2663Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000790.1 ID=Tc01v2_t000790.1|Name=Tc01v2_t000790.1|organism=Theobroma cacao|type=mRNA|length=1344bp
ATGACGGTGGCGAGTGCTGCCACTGCCCATTCCAAGAAGCTCATGAAGCT
TACTCTTTCTCTCTTTCGAAACGGCTTCAACTCCTCCAAATGCAAAACAG
CGGCGAAGATGGCGGTAGCAAGGATAAAGCTGCTGAGGAACAAGAGACAG
GTGGTGGTGAAGCAGATGAGGCGCGACATTGCCTTACTCCTTCAGTCCGG
TCAAGATGCCACAGCTCGTATTCGGGTTGAACATGTCATAAGAGAACAGA
ATGTTTTGGCTGCAAATGAATTCATTGAGCTCTTCTGTGAGTTAGTTGTA
GCCAGGCTTTCCATCATTGCTAAGCGAAGGGAATGCCCTGCTGATCTGAA
AGAAGGAATTGCTAGTTTGATTTTTGCTGCCCCAAGGTGTGCTGAAATTC
CAGAACTAGTAGCAATTAGAGATATCTTTCAGAAGAAATATGGAAAAGAT
TTTGTATCTGCAGCCACCGATCTGCGGCCCAATTGTGGTGTTAATCGCCT
GCTGATTGACAAGCTCTCTGTAAAAACTCCTACTGGTGAAGTAAAGTTGA
AAGTCATGAAGGAAATAGCCAAAGAACACAACATAGAATGGGATACAACT
GAATCAGAGAAGGAATTGCTCAAACCTCCAGAAGAGCTTATAGAGGGACC
ACGGACTTTTGTTAGTGCCACCAGCTTGCCTGTGAAACCTGCAACAAATC
ATTCTCTCGAGACAAAACAGCTAATGACTAGAGGAGAAGGCTCTATGCAT
TTTAAAGACACAGTCTCGGCTGCTGAAGCAGCTGAAGAATCTGCAAAAAA
AGCAATTGCTGCTGCTCAAGCTGCTGCTTATTTGGCAAACCGAGACAGTA
ATCTATTTAATGAAGCATCTGGTCATGTTAAACGTTTAAATGATTCAAGC
ATCATTACTGGATTTGGAAACCTTTCTGCGAATTCTGCTGGTGGATTTCT
TCCTACTTATCCTCCAGTCAATTCTCAGCACATGGATCCTCCGGTCCCTG
GGAGAACATATGAATCTCGGAGTTTTGAAAGGTCTAATTACTATCCGGGT
AGTGAGGAAGCAAGACCTAACAATGTGGAAGTTGGAAAGACCTTCAGGAG
ACACAGCAACAATTCCCCTTCTGCACATTCAGATATAAAGTTCGATGAAT
CAGATTGTGATGAAGAAATAGAAACTGAAGATGCTTCCGGCAGCATTAAA
CGCCCACCTGAAAGATCTCCACCACCAGTACCTTCATCTTATGATAAACA
GGATTCTATTCATCGTGTTCACCCCAAATTGCCAGATTATGATGATCTTG
CAGCTCGCTTTGAAGCTCTCAAGTATCGCAAGTCACTACCTTGA
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protein sequence of Tc01v2_p000790.1

>Tc01v2_p000790.1 ID=Tc01v2_p000790.1|Name=Tc01v2_p000790.1|organism=Theobroma cacao|type=polypeptide|length=448bp
MTVASAATAHSKKLMKLTLSLFRNGFNSSKCKTAAKMAVARIKLLRNKRQ
VVVKQMRRDIALLLQSGQDATARIRVEHVIREQNVLAANEFIELFCELVV
ARLSIIAKRRECPADLKEGIASLIFAAPRCAEIPELVAIRDIFQKKYGKD
FVSAATDLRPNCGVNRLLIDKLSVKTPTGEVKLKVMKEIAKEHNIEWDTT
ESEKELLKPPEELIEGPRTFVSATSLPVKPATNHSLETKQLMTRGEGSMH
FKDTVSAAEAAEESAKKAIAAAQAAAYLANRDSNLFNEASGHVKRLNDSS
IITGFGNLSANSAGGFLPTYPPVNSQHMDPPVPGRTYESRSFERSNYYPG
SEEARPNNVEVGKTFRRHSNNSPSAHSDIKFDESDCDEEIETEDASGSIK
RPPERSPPPVPSSYDKQDSIHRVHPKLPDYDDLAARFEALKYRKSLP*
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