Tc01v2_t000090.1

Overview
NameTc01v2_t000090.1
Unique NameTc01v2_t000090.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length519
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productuncharacterized LOC18610603
NoteVacuolar iron transporter family protein, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610603
GenbankXM_018116616.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000090Tc01v2_g000090Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000090.1Tc01v2_p000090.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto515auto515Theobroma cacaoexon
exon-auto516auto516Theobroma cacaoexon
exon-auto517auto517Theobroma cacaoexon
exon-auto518auto518Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto519auto519Theobroma cacaoCDS
CDS-auto520auto520Theobroma cacaoCDS
CDS-auto521auto521Theobroma cacaoCDS
CDS-auto522auto522Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000090.1 ID=Tc01v2_t000090.1|Name=Tc01v2_t000090.1|organism=Theobroma cacao|type=mRNA|length=519bp
ATGGACCAACAAGAGGAGGAGTTCTCTCCACCTTTGGCCGTCCTTCCAAG
GTTGGATCGCCTTGATCGTTTGCTGCAGTTTCTAGAAGAGAGACGACGCT
GCTTGTTGGCAAGGCAATCTTCTAACTACCCTTCCTTGACTTCAATGGAA
GTACAGTGCAAGACCCTGTCATCAGCACTTGAGGAAGTTTCTCATAAGGG
TACCCTGATGGAGAGACTGGCAGCGCTTGAGAATCGAGTCTTACAGTTCA
GTCTGGAGCTAGATATTGGAAACACATCGAGGTCAAGCTCTTCCACCATT
CCCATCCCTGAACAAAATGTACCCGGAAACAATGAGCTGAATGGAACTCT
GAAAATGGCACCCCAAAAGAATCAAGATCCTCTCATCAAAGGTCAAGAGA
GCAGCACCACAAAAGCATGCGAAAGAAAACCCCCGAAAGGCGGAAGACGA
AAATCAATACTTATTACCGAAGCAGTCAGGCGTAAGAAACTGCTTCGCTG
GTTTCAAATGGGATGTTGA
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protein sequence of Tc01v2_p000090.1

>Tc01v2_p000090.1 ID=Tc01v2_p000090.1|Name=Tc01v2_p000090.1|organism=Theobroma cacao|type=polypeptide|length=173bp
MDQQEEEFSPPLAVLPRLDRLDRLLQFLEERRRCLLARQSSNYPSLTSME
VQCKTLSSALEEVSHKGTLMERLAALENRVLQFSLELDIGNTSRSSSSTI
PIPEQNVPGNNELNGTLKMAPQKNQDPLIKGQESSTTKACERKPPKGGRR
KSILITEAVRRKKLLRWFQMGC*
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