Tc10v2_t014540.2

Overview
NameTc10v2_t014540.2
Unique NameTc10v2_t014540.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length777
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producthydroxyacylglutathione hydrolase cytoplasmic, transcript variant X2
NoteHydroxyacylglutathione hydrolase cytoplasmic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587524
GenbankXM_007011338.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g014540Tc10v2_g014540Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p014540.2Tc10v2_p014540.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto513995auto513995Theobroma cacaoexon
exon-auto513996auto513996Theobroma cacaoexon
exon-auto513997auto513997Theobroma cacaoexon
exon-auto513998auto513998Theobroma cacaoexon
exon-auto513999auto513999Theobroma cacaoexon
exon-auto514000auto514000Theobroma cacaoexon
exon-auto514001auto514001Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto514002auto514002Theobroma cacaoCDS
CDS-auto514003auto514003Theobroma cacaoCDS
CDS-auto514004auto514004Theobroma cacaoCDS
CDS-auto514005auto514005Theobroma cacaoCDS
CDS-auto514006auto514006Theobroma cacaoCDS
CDS-auto514007auto514007Theobroma cacaoCDS
CDS-auto514008auto514008Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t014540.2 ID=Tc10v2_t014540.2|Name=Tc10v2_t014540.2|organism=Theobroma cacao|type=mRNA|length=777bp
ATGAAAATCTTAGAGGTTCCATGCTTAGAAGACAACTACTCCTATCTGAT
CATAGATGAAAGCACAAAAGAGGCAGCGGCGGTGGATCCGGCGGAGCCGC
AGAAGGTGGTTGAAGCTGCCAATCAGCAGGGAGTTGTTCTCAAGTTGGTT
CTCACCACTCATCACCACTGGGATCACGCTGGTGGGAATGATAAGATCAA
GGGGCTGGTCCCCGGGATTAAGGTTTACGGGGGTTCCCTGGATAATGTCA
GAGGCTGCACTGATCAGCTCCAAAATGGTGATAACTTACAACTTACCTCT
CATATCAACATACTGTCTCTTCACACCCCTTGCCACACCAAGGGTCACAT
AAGTTACTACGTCACTGGCAAAGAGGGAGAGGACCCTGCTGTTTTTACTG
GAGATACACTCTTCATTGCTGGTTGCGGGAAATTTTTTGAAGGCACAGCA
GAACAGATGTATCAATCACTCTGTGTAACCTTGGGTTCACTGCCAAAGCC
AACTCGTGTTTTCTGTGGACATGAGTACACAGTGAAGAACCTGCAATTCG
CATTGACAGTTGAGCCAAAAAATGCAAGGATACAGCAAAAGTTAGCATGG
GCTACTAGTCAGCGACAAGCAGGTCTGCCCACCATCCCCTCAACCATTGA
GGAAGAATTGGAGACAAATCCATTTATGCGAGTTGATCTACCAGAACTTC
AGGGGCGCATTGGTTGCCAGTCTCCTGTTGAAGCACTCCGGGAGATTAGG
CGGATGAAGGACAATTGGCGAGGCTAA
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protein sequence of Tc10v2_p014540.2

>Tc10v2_p014540.2 ID=Tc10v2_p014540.2|Name=Tc10v2_p014540.2|organism=Theobroma cacao|type=polypeptide|length=259bp
MKILEVPCLEDNYSYLIIDESTKEAAAVDPAEPQKVVEAANQQGVVLKLV
LTTHHHWDHAGGNDKIKGLVPGIKVYGGSLDNVRGCTDQLQNGDNLQLTS
HINILSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTA
EQMYQSLCVTLGSLPKPTRVFCGHEYTVKNLQFALTVEPKNARIQQKLAW
ATSQRQAGLPTIPSTIEEELETNPFMRVDLPELQGRIGCQSPVEALREIR
RMKDNWRG*
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