Tc10v2_t013160.1

Overview
NameTc10v2_t013160.1
Unique NameTc10v2_t013160.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length690
Properties
Property NameValue
NoteAldolase-type TIM barrel family protein, putative
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productindole-3-glycerol phosphate synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587372
GenbankXM_018128703.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g013160Tc10v2_g013160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p013160.1Tc10v2_p013160.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto511371auto511371Theobroma cacaoexon
exon-auto511372auto511372Theobroma cacaoexon
exon-auto511373auto511373Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto511374auto511374Theobroma cacaoCDS
CDS-auto511375auto511375Theobroma cacaoCDS
CDS-auto511376auto511376Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t013160.1 ID=Tc10v2_t013160.1|Name=Tc10v2_t013160.1|organism=Theobroma cacao|type=mRNA|length=690bp
ATGAGGTCATCGATACACAGCCAAACCGAATCAATTGCAGAATCCCCCTT
GTGGCTTTTAATTGCAAAAATGCTGGTATTGGTTTTCCTGATAGCGATTG
CTGGAATTTCCTTACAGTCAGTTCCTTCCTTCAATCACCGTCCTAGTTTC
TTCATCCCGCGCTCTAATTTTCCGGTCATTCGAGCCCAACTGTCCCCGAA
AAGGAGAGAGGAGGAAGATGTGTTGAACATGAAGGAATGGGAACTTGGAA
TGTTTCAAAACGAAGTCGCTGCGAGTCAAGGCATAAGAATAAGGCGAAGA
CCACCTATGGGTCCGCCGTTGCATTACATGGGCCCTTTCGATTTCCGTTT
GCAAAACGAGGATAACACTCCTCGCAGTTTTCTCGAAGAAATCATTTGGC
AAAAAGACGTGGAAGTTTCCCACATGAAAGAGAAGAAGCCTCTGGCTTCA
TTGAAGAAGTTTATCGAGAATGCAGCTCGCACTAGAGACTTCGTCGGAGC
TCTTAAGGCGGCGCATTCACGGACTGGGTTGCCTGGTTTGATTGCTGAAG
TTAAGAAGGGTTCGCCTACCAGAGGAATTCTCAGAGATGAAGTTAAGAAG
GGTTTGCTTTGGAAGGAGAAAGTAAAAAAATCAACTAAAATACAAAATCT
AATGGCCATATTTAGATTCTTACTACTACTACTATTATGA
back to top

protein sequence of Tc10v2_p013160.1

>Tc10v2_p013160.1 ID=Tc10v2_p013160.1|Name=Tc10v2_p013160.1|organism=Theobroma cacao|type=polypeptide|length=230bp
MRSSIHSQTESIAESPLWLLIAKMLVLVFLIAIAGISLQSVPSFNHRPSF
FIPRSNFPVIRAQLSPKRREEEDVLNMKEWELGMFQNEVAASQGIRIRRR
PPMGPPLHYMGPFDFRLQNEDNTPRSFLEEIIWQKDVEVSHMKEKKPLAS
LKKFIENAARTRDFVGALKAAHSRTGLPGLIAEVKKGSPTRGILRDEVKK
GLLWKEKVKKSTKIQNLMAIFRFLLLLLL*
back to top