Tc10v2_t012900.1

Overview
NameTc10v2_t012900.1
Unique NameTc10v2_t012900.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1449
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productxylose isomerase
NoteXylose isomerase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587334
GenbankXM_018129347.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc10v2_g012900Tc10v2_g012900Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc10v2_p012900.1Tc10v2_p012900.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto510882auto510882Theobroma cacaoexon
exon-auto510883auto510883Theobroma cacaoexon
exon-auto510884auto510884Theobroma cacaoexon
exon-auto510885auto510885Theobroma cacaoexon
exon-auto510886auto510886Theobroma cacaoexon
exon-auto510887auto510887Theobroma cacaoexon
exon-auto510888auto510888Theobroma cacaoexon
exon-auto510889auto510889Theobroma cacaoexon
exon-auto510890auto510890Theobroma cacaoexon
exon-auto510891auto510891Theobroma cacaoexon
exon-auto510892auto510892Theobroma cacaoexon
exon-auto510893auto510893Theobroma cacaoexon
exon-auto510894auto510894Theobroma cacaoexon
exon-auto510895auto510895Theobroma cacaoexon
exon-auto510896auto510896Theobroma cacaoexon
exon-auto510897auto510897Theobroma cacaoexon
exon-auto510898auto510898Theobroma cacaoexon
exon-auto510899auto510899Theobroma cacaoexon
exon-auto510900auto510900Theobroma cacaoexon
exon-auto510901auto510901Theobroma cacaoexon
exon-auto510902auto510902Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto510903auto510903Theobroma cacaoCDS
CDS-auto510904auto510904Theobroma cacaoCDS
CDS-auto510905auto510905Theobroma cacaoCDS
CDS-auto510906auto510906Theobroma cacaoCDS
CDS-auto510907auto510907Theobroma cacaoCDS
CDS-auto510908auto510908Theobroma cacaoCDS
CDS-auto510909auto510909Theobroma cacaoCDS
CDS-auto510910auto510910Theobroma cacaoCDS
CDS-auto510911auto510911Theobroma cacaoCDS
CDS-auto510912auto510912Theobroma cacaoCDS
CDS-auto510913auto510913Theobroma cacaoCDS
CDS-auto510914auto510914Theobroma cacaoCDS
CDS-auto510915auto510915Theobroma cacaoCDS
CDS-auto510916auto510916Theobroma cacaoCDS
CDS-auto510917auto510917Theobroma cacaoCDS
CDS-auto510918auto510918Theobroma cacaoCDS
CDS-auto510919auto510919Theobroma cacaoCDS
CDS-auto510920auto510920Theobroma cacaoCDS
CDS-auto510921auto510921Theobroma cacaoCDS
CDS-auto510922auto510922Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc10v2_t012900.1 ID=Tc10v2_t012900.1|Name=Tc10v2_t012900.1|organism=Theobroma cacao|type=mRNA|length=1449bp
ATGACATTGGAAAAGAAAAATATGGCTGGCAGGATTTTATTGTTACTTCT
TTGTATGAATGCGGTCTCTTTTATAGTGAATGCTGTACCACAAACATGCC
CTGCTGATCTTGGTGGAAAATGTGCTGAAGATGATGATTGGGAAGGGGAA
TTTTTCCCTGGAATTCCCAAAATTAAGTACGAGGGTACTTCTAGCAAAAA
TCCACTGGCATACAAATGGTACAATGCGGAAGAGGAGATTCTTGGGAAGA
AAATGAAGGACTGGTTGAGATTTAGTGTTGCATTTTGGCATACATTCCGT
GGGACAGGTGCTGATCCCTTTGGTGCACCCACTAAGTATTGGCCATGGGA
AGATGGTACCAATTCCATTGCTATGGCCAAAAGAAGAATGAGTGCCAACT
TTGAATTCATAAACAAGCTTGGAGTTGATTGGTGGTGTTTTCATGACAGG
GACATTGCTCCTGATGGCAAAACCCTAGAGGAAGCTAATGCAAACTTGGA
TGAAGTTGTTGCCCTCGCTAAAGAACTTCAGGGAGACAAGATCCGTCCTC
TGTGGGGTACAGCTCAACTATTTATGCATCCTCGTTACATGCATGGTGGT
GCTACTAGCTCTGAAGTGGGTGTATATGCATATGCTGCAGCTCAAGTCAA
GAAAGCCATGGAGGTCACACATTATCTAGGGGGTGAAAACTATGTCTTTT
GGGGTGGTCGTGAGGGTTATCAATCACTCTTGAACACAGACATGGAAAGA
GAGCTTGATCATCTGGCAAGATTTCTTGAAGCTGCCGTTGCCTACAAGAA
GAAGATTGGATTCAATGGAACTCTACTGATTGAACCTAAGCCTCAAGAAC
CTACCAAACATCAGTATGACTGGGATGCTGCAACAACAGCTAACTTCTTG
CGAAAATACGGGCTGCTTGGAGAATTCAAACTTAACATTGAATGCAACCA
TGCCACCCTCTCTGGTCACAGCTGTCATCATGATCTTGAGACTGCAAGAA
TCAATGGATTGCTAGGAAATATTGATGCGAACACTGGCGATCCTCAGATT
GGTTGGGATACAGATCAGTTCATGACAGATATTGGAGAGGCTACTATGGT
TATGCTAAGTGTGATAAGAAATGGAGGATTAGCACCAGGAGGCTTCAACT
TTGATGCAAAATTACGGAGAGAGAGTACAGATGTTGAGGACTTGTTCATT
GCTCATATTAGTGGAATGGACACCTTGGCCCGTGGACTCCGAAATGCTGC
CAAGCTAATTGAGGATGGTTCTTTGGTTGAGCTTGTTCGTAAGCGATATT
CCAGCTTTGACACAGAGATTGGTGCTGAAATTGAGGCTGGTAAAGCTGAT
TTTGAAATGCTTGAGAAGCTAGCCAAGGAATGGGGCGAACCAAAGGTTGC
TTCAGCCAAGCAGGAACTTGCAGAGATGATTTTCCAATCTGCATTGTAG
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protein sequence of Tc10v2_p012900.1

>Tc10v2_p012900.1 ID=Tc10v2_p012900.1|Name=Tc10v2_p012900.1|organism=Theobroma cacao|type=polypeptide|length=483bp
MTLEKKNMAGRILLLLLCMNAVSFIVNAVPQTCPADLGGKCAEDDDWEGE
FFPGIPKIKYEGTSSKNPLAYKWYNAEEEILGKKMKDWLRFSVAFWHTFR
GTGADPFGAPTKYWPWEDGTNSIAMAKRRMSANFEFINKLGVDWWCFHDR
DIAPDGKTLEEANANLDEVVALAKELQGDKIRPLWGTAQLFMHPRYMHGG
ATSSEVGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMER
ELDHLARFLEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATTANFL
RKYGLLGEFKLNIECNHATLSGHSCHHDLETARINGLLGNIDANTGDPQI
GWDTDQFMTDIGEATMVMLSVIRNGGLAPGGFNFDAKLRRESTDVEDLFI
AHISGMDTLARGLRNAAKLIEDGSLVELVRKRYSSFDTEIGAEIEAGKAD
FEMLEKLAKEWGEPKVASAKQELAEMIFQSAL*
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